Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0140
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036688-2|AAY86223.1|   91|Caenorhabditis elegans Hypothetical ...    34   0.10 
AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81114-3|CAB03289.1|  664|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AF036688-2|AAY86223.1|   91|Caenorhabditis elegans Hypothetical
           protein C24D10.9 protein.
          Length = 91

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +2

Query: 533 SAAGPTEPKNRLSRSLQAACKALSCTRGFGG-SPVHMK 643
           S++GPT+ + R++ S+ +A + LS   G GG  PVH++
Sbjct: 30  SSSGPTKRRGRIAASIDSARRRLSLQHGAGGQDPVHLQ 67


>AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical
           protein Y44A6B.3 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 428 SWDSCLDRYSWDLQ*VVQRSASNVPRPSPSRCLRQSAAGPTE 553
           SW+ CL    WD   +V   + NVP  S    + +  A P+E
Sbjct: 42  SWEDCLKICFWDSNCLVILDSENVPHFSYGTFMIERLASPSE 83


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/75 (26%), Positives = 30/75 (40%)
 Frame = -1

Query: 656 INGDPSCALGCPRSPGYTKAPCKLLASSSTNDSSVPLVPLPTDEDNGSERVEEHWMRFFA 477
           I G P   +  P  P  T++      SS + D      P P +E+      EE    FF 
Sbjct: 405 IPGSPGSQIKNPLKPSSTESETIGPESSESEDDGERSTPTPQEEE------EEMMRNFFP 458

Query: 476 QPTAGPSYIYLGNYP 432
           +P +  +Y   G+ P
Sbjct: 459 RPVSAQAYQPPGHQP 473


>Z81114-3|CAB03289.1|  664|Caenorhabditis elegans Hypothetical
           protein T04D3.3 protein.
          Length = 664

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -1

Query: 644 PSCALGCPRSPGYTKAPCKLLASSSTNDSSVPLVPLPTDEDNGSERVEEHWMRFFAQPTA 465
           PS   G  +SP    +P   L +SST+ SS+  +PL      G   +   WM+F  +  A
Sbjct: 569 PSVDGGDDKSPSNALSPLPDLRNSSTSPSSIRRIPL---NYAGKLDIPTPWMKFLHENKA 625


>AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical
           protein ZK488.6 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 644 PSCALGCPRSPGYTKAPCKLLASSSTNDSSVPLVP 540
           P C + CPR PG TK        + T + S+P+VP
Sbjct: 195 PRCTVFCPRRPG-TKFITISKDLNETLEYSIPIVP 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,266,903
Number of Sequences: 27780
Number of extensions: 312246
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)