Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0139
         (381 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0633 + 26276454-26277368                                         32   0.13 
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626...    29   1.2  
01_01_0836 + 6527902-6528218,6529280-6529632,6529722-6529889,653...    28   2.2  
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614...    27   5.0  
01_01_0258 - 2101298-2101600                                           27   6.6  
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794...    26   8.7  

>03_05_0633 + 26276454-26277368
          Length = 304

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 379 RIARRTRWSPARRDAHMPAAPQPSPKPQRN 290
           R ARR      RRDA +P  P PSP P R+
Sbjct: 201 RAARRGDGGGVRRDAAVPQRPSPSPSPLRS 230


>10_08_0683 -
           19860777-19861070,19861677-19861874,19862498-19862659,
           19862763-19862911,19863089-19863236,19863317-19863385,
           19863471-19863719,19863937-19864131,19864444-19864560,
           19864978-19866537
          Length = 1046

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 355 SPARRDAHMPAAPQPSPKPQRNVNHS 278
           SP+R     P+AP P P+PQ   +HS
Sbjct: 45  SPSRSFHGYPSAPPPQPQPQPYAHHS 70


>01_01_0836 +
           6527902-6528218,6529280-6529632,6529722-6529889,
           6530004-6530051,6530142-6530372,6530435-6530548,
           6530638-6530723
          Length = 438

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 349 ARRDAHMPAAPQPSPKPQR 293
           ARR A  PAAP P+P P R
Sbjct: 33  ARRQAAPPAAPAPAPAPAR 51


>03_02_0173 +
           6138406-6138628,6139769-6139857,6139922-6140608,
           6140682-6140834,6140922-6141290
          Length = 506

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 370 RRTRWSPARRDAHMPAAPQP 311
           RR  W   +R AH PA P P
Sbjct: 30  RRAEWQQRKRGAHDPAPPPP 49


>01_01_0258 - 2101298-2101600
          Length = 100

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 376 IARR--TRWSPARRDAHMPAAPQPSPKPQRNVNHS 278
           +AR+  T  + A RD +  AA QPSPKP     +S
Sbjct: 39  VARKPVTAAAAATRDVYGRAADQPSPKPPAAARNS 73


>11_02_0065 -
           7938007-7938393,7939292-7939435,7940597-7940665,
           7940762-7940809,7941488-7941584,7941688-7941767,
           7941841-7941912,7942256-7942350,7943903-7943984,
           7945176-7945209,7945255-7945262,7945657-7946058
          Length = 505

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 352 PARRDAHMPAAPQPSPKPQ 296
           PA+ +    A PQP P+PQ
Sbjct: 442 PAKNEQQQQAQPQPQPQPQ 460


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,438,403
Number of Sequences: 37544
Number of extensions: 145245
Number of successful extensions: 588
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)