Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0139
         (381 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10| Best HMM Match : Complex1_24kDa (HMM E-Value=4.4)               29   1.3  
SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)                 28   2.2  
SB_11877| Best HMM Match : efhand (HMM E-Value=7.8e-07)                27   5.2  

>SB_10| Best HMM Match : Complex1_24kDa (HMM E-Value=4.4)
          Length = 285

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 376 IARRTRWSPARRDAHMPAAPQPSPKPQRNVNHS 278
           IAR+    PA+R  H P AP  +P+    +N +
Sbjct: 228 IARQVDVQPAQRQTHRPNAPASNPEDYYKINQT 260


>SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)
          Length = 899

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 63  YKYIIIGTCCYADAIRSVLAQSQLI 137
           YKY +  TCC ++ +  VL  +Q++
Sbjct: 468 YKYPLFSTCCISNGLADVLVHNQVL 492


>SB_11877| Best HMM Match : efhand (HMM E-Value=7.8e-07)
          Length = 390

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 282 IPIVNERKQKLIDTRD*EMTDDRSNLCN-ASRFDAF 178
           IP+ + R++ ++ +   E+ D    LCN A RF AF
Sbjct: 239 IPLTSYRRKSVLFSNKQELADLAEELCNSAKRFSAF 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,832,170
Number of Sequences: 59808
Number of extensions: 168832
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)