Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0139
         (381 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   0.71 
Y08163-1|CAA69355.1|  192|Anopheles gambiae hypothetical protein...    24   1.6  
Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.             24   2.2  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 355  SPARRDAHMPAAPQPSPKPQRNVNHS 278
            SPAR     PA+P PS K +R+ + S
Sbjct: 1454 SPARLARSSPASPTPSKKSKRHQSAS 1479


>Y08163-1|CAA69355.1|  192|Anopheles gambiae hypothetical protein
           protein.
          Length = 192

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 263 RSFTIGMVHVSLWFRAW 313
           + FTIG + V  +FRAW
Sbjct: 73  KKFTIGTLGVGSFFRAW 89


>Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.
          Length = 124

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 275 IGMVHVSLWFRAW 313
           + +V +SLWF AW
Sbjct: 71  VALVTISLWFMAW 83


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 327,719
Number of Sequences: 2352
Number of extensions: 5233
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 29074284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)