Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0139
         (381 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L40357-1|AAA73877.1|  120|Homo sapiens thyroid receptor interact...    28   8.7  
BC009529-1|AAH09529.1|   77|Homo sapiens high mobility group nuc...    28   8.7  
AY043282-1|AAK85736.1|   99|Homo sapiens TRIP7-like protein prot...    28   8.7  
AL355796-2|CAH74095.1|   99|Homo sapiens high mobility group nuc...    28   8.7  
AL355796-1|CAH74094.1|   77|Homo sapiens high mobility group nuc...    28   8.7  
AF401520-1|AAK92012.1|   77|Homo sapiens TRIP7 variant protein p...    28   8.7  
AF274949-1|AAK07526.1|   99|Homo sapiens PNAS-24 protein.              28   8.7  

>L40357-1|AAA73877.1|  120|Homo sapiens thyroid receptor interactor
           protein.
          Length = 120

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -3

Query: 364 TRWSPARRDAHM---PAAPQPSPKPQR 293
           T+  P RR A +   PA P+P PKP++
Sbjct: 40  TKQEPTRRSARLSAKPAPPKPEPKPRK 66


>BC009529-1|AAH09529.1|   77|Homo sapiens high mobility group
           nucleosomal binding domain 3 protein.
          Length = 77

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -3

Query: 364 TRWSPARRDAHM---PAAPQPSPKPQR 293
           T+  P RR A +   PA P+P PKP++
Sbjct: 19  TKQEPTRRSARLSAKPAPPKPEPKPRK 45


>AY043282-1|AAK85736.1|   99|Homo sapiens TRIP7-like protein
           protein.
          Length = 99

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -3

Query: 364 TRWSPARRDAHM---PAAPQPSPKPQR 293
           T+  P RR A +   PA P+P PKP++
Sbjct: 19  TKQEPTRRSARLSAKPAPPKPEPKPRK 45


>AL355796-2|CAH74095.1|   99|Homo sapiens high mobility group
           nucleosomal binding domain 3 protein.
          Length = 99

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -3

Query: 364 TRWSPARRDAHM---PAAPQPSPKPQR 293
           T+  P RR A +   PA P+P PKP++
Sbjct: 19  TKQEPTRRSARLSAKPAPPKPEPKPRK 45


>AL355796-1|CAH74094.1|   77|Homo sapiens high mobility group
           nucleosomal binding domain 3 protein.
          Length = 77

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -3

Query: 364 TRWSPARRDAHM---PAAPQPSPKPQR 293
           T+  P RR A +   PA P+P PKP++
Sbjct: 19  TKQEPTRRSARLSAKPAPPKPEPKPRK 45


>AF401520-1|AAK92012.1|   77|Homo sapiens TRIP7 variant protein
           protein.
          Length = 77

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -3

Query: 364 TRWSPARRDAHM---PAAPQPSPKPQR 293
           T+  P RR A +   PA P+P PKP++
Sbjct: 19  TKQEPTRRSARLSAKPAPPKPEPKPRK 45


>AF274949-1|AAK07526.1|   99|Homo sapiens PNAS-24 protein.
          Length = 99

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -3

Query: 364 TRWSPARRDAHM---PAAPQPSPKPQR 293
           T+  P RR A +   PA P+P PKP++
Sbjct: 19  TKQEPTRRSARLSAKPAPPKPEPKPRK 45


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,382,712
Number of Sequences: 237096
Number of extensions: 810527
Number of successful extensions: 2577
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2562
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)