Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0139
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92797-1|CAB07234.1|  552|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U88169-3|AAK68396.1|  345|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    26   7.9  

>Z92797-1|CAB07234.1|  552|Caenorhabditis elegans Hypothetical
           protein H25P06.1 protein.
          Length = 552

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 275 IGMVHVSLWFRAWLGRCRHVGVTARRTPTRP 367
           +G++ + + +R W  +    G  + RTPT P
Sbjct: 2   LGIIELGIQYRIWRSQAHGKGKKSPRTPTTP 32


>U88169-3|AAK68396.1|  345|Caenorhabditis elegans Hypothetical
           protein T03F1.6b protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 355 SPARRDAHMPAAPQPSPKPQRNVNHS 278
           S  R   H PA P+PS + +   NHS
Sbjct: 182 SSMRLTYHQPAEPKPSEQTRHGQNHS 207


>U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical
           protein T03F1.6a protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 355 SPARRDAHMPAAPQPSPKPQRNVNHS 278
           S  R   H PA P+PS + +   NHS
Sbjct: 182 SSMRLTYHQPAEPKPSEQTRHGQNHS 207


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
           protein Y51H4A.12 protein.
          Length = 1677

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -3

Query: 370 RRTRWSPARRDAHMPAAP---QPSPKPQRNVNHSD 275
           +R R S  R DA M A P   QP P P     H+D
Sbjct: 725 QRKRHSSGRYDALMGAMPLQQQPPPPPPSQFQHTD 759


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,286,244
Number of Sequences: 27780
Number of extensions: 127716
Number of successful extensions: 335
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)