Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0139
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.6  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   1.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.5  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       20   8.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 275 IGMVHVSLWFRAW 313
           + ++ +SLWF AW
Sbjct: 279 VALMTISLWFMAW 291


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 275 IGMVHVSLWFRAW 313
           + ++ +SLWF AW
Sbjct: 29  VALMTISLWFMAW 41


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 131 LALCENRADGIGIATSADYDIFVLKL 54
           +A+ E      G+A  A YD  VLKL
Sbjct: 311 IAIKEKLVKDSGVAKDAAYDNIVLKL 336


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 319  PQPSPKPQRNVNHS 278
            P  SP+P+  VNH+
Sbjct: 1286 PPSSPQPRLTVNHA 1299


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 343  RDAHMPAAPQPSPKPQRN 290
            R+  +  +P+P P P RN
Sbjct: 1849 RNIPVSGSPEPPPPPPRN 1866


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 316  GALPACGRHGAPDSNASYELC 378
            G L    R   P SNA YE+C
Sbjct: 1222 GRLLGFWRVEMPRSNADYEVC 1242


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 355 SPARRDAHMPAAPQPSPKPQRNVNHSDC 272
           SP+    HM   P P+  P   + ++ C
Sbjct: 114 SPSPGMGHMGHTPTPNGHPSTPIVYASC 141


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 377 HSS*DALESGAP*RPHAGSAPAKP 306
           H S  A + G+P  P  G  P  P
Sbjct: 28  HQSPQAPQRGSPPNPSQGPPPGGP 51


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 337 AHMPAAPQPSPKPQ 296
           +++ AAP+P P P+
Sbjct: 17  SYIYAAPEPEPAPE 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,077
Number of Sequences: 438
Number of extensions: 1592
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)