Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0138
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 160 1e-40
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 130 2e-31
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 105 3e-24
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 91 1e-19
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 86 4e-18
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 81 1e-16
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 69 4e-13
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 69 6e-13
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 61 1e-10
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 59 5e-10
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 56 3e-09
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 54 1e-08
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 54 2e-08
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 54 2e-08
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 52 4e-08
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 50 2e-07
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 49 5e-07
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 48 1e-06
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 47 2e-06
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 42 6e-05
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 42 6e-05
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 35 0.007
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 26 3.1
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 25 5.4
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 9.5
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 9.5
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 160 bits (389), Expect = 1e-40
Identities = 71/95 (74%), Positives = 84/95 (88%)
Frame = +3
Query: 255 GVDFKIRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ 434
GVDFKIRT +L GKT+KLQIWDT GQERF+TITSSYYRGAHGIIIVYD TDQDSF+NVKQ
Sbjct: 42 GVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQ 101
Query: 435 WLEEMDRYACDNVNKLLVGNKCDLTLKRLSDFSTA 539
WL+E+DRYA + VN+LLVGNK D+ K++ ++S A
Sbjct: 102 WLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVA 136
Score = 83.8 bits (198), Expect = 1e-17
Identities = 39/47 (82%), Positives = 41/47 (87%)
Frame = +1
Query: 133 MNPEYDYLFKLLLKGDSGVGKSCL*LRFADDTYTESYISTMAWTLKL 273
MNPEYDYLFKLLL GDSGVGKSCL LRFADDTYTESYIST+ K+
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKI 47
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 130 bits (313), Expect = 2e-31
Identities = 54/92 (58%), Positives = 74/92 (80%)
Frame = +3
Query: 255 GVDFKIRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ 434
G+DFKIRT++L+GK IKLQIWDT GQERF+TIT++YYRGA GI+++YD TD+ SF NV+
Sbjct: 43 GIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRT 102
Query: 435 WLEEMDRYACDNVNKLLVGNKCDLTLKRLSDF 530
W ++++A +NV K+L+GNKCD +R F
Sbjct: 103 WFSNVEQHASENVYKILIGNKCDCEDQRQVSF 134
Score = 60.9 bits (141), Expect = 1e-10
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +1
Query: 145 YDYLFKLLLKGDSGVGKSCL*LRFADDTYTESYISTMAWTLKL 273
YDYL KLLL GDSGVGKSCL LRF++D++T S+I+T+ K+
Sbjct: 6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKI 48
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 105 bits (253), Expect = 3e-24
Identities = 48/84 (57%), Positives = 61/84 (72%)
Frame = +3
Query: 255 GVDFKIRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ 434
GV+F R + L+ K IK QIWDT GQER++ ITS+YYRGA G +IVYD T Q SF NV +
Sbjct: 44 GVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGR 103
Query: 435 WLEEMDRYACDNVNKLLVGNKCDL 506
WL+E+ +A N+ +LVGNK DL
Sbjct: 104 WLKELREHADSNIVIMLVGNKTDL 127
Score = 42.3 bits (95), Expect = 4e-05
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +1
Query: 142 EYDYLFKLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
EYDYLFK +L GDSGVGKS L +RF + + ST+
Sbjct: 6 EYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTI 43
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 90.6 bits (215), Expect = 1e-19
Identities = 41/88 (46%), Positives = 61/88 (69%)
Frame = +3
Query: 255 GVDFKIRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ 434
G+DF +T+ L +T++LQ+WDT GQERF+++ SY R + IIVYD T+ +SF N ++
Sbjct: 45 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEK 104
Query: 435 WLEEMDRYACDNVNKLLVGNKCDLTLKR 518
W+E++ D+V +LVGNK DL KR
Sbjct: 105 WIEDVRAERGDDVIIVLVGNKTDLADKR 132
Score = 29.1 bits (62), Expect = 0.44
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 157 FKLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
FKL+ G+ VGK+ L RF D + +Y +T+
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATI 44
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 85.8 bits (203), Expect = 4e-18
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Frame = +3
Query: 255 GVDFKIRTVDLN----GKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFS 422
G+DF R + + K IKLQIWDT GQE+F+++ +YYRGA G ++VYD T++DSF
Sbjct: 43 GIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFE 102
Query: 423 NVKQWLEEMDRYACDNVNKLLVGNKCDLTLKR 518
+ WL ++ A + +L G+K DL +R
Sbjct: 103 ELSSWLSDIRAMAPSTICVVLAGSKSDLQNQR 134
Score = 38.7 bits (86), Expect = 5e-04
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 145 YDYLFKLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
YDYL K++L G SG GKSCL RF + + + T+
Sbjct: 6 YDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTV 42
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 80.6 bits (190), Expect = 1e-16
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Frame = +3
Query: 255 GVDFKIRTVDLNGKT-IKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVK 431
G F +T+ ++ T +KL+IWDT GQER+K++ YYR A+ I+VYD T S K
Sbjct: 48 GAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAK 107
Query: 432 QWLEEMDRYACDNVNKLLVGNKCDLTLKR 518
W++E+ R A + + L GNK DL +R
Sbjct: 108 SWIKELQRQAPEGIVIALAGNKLDLAQER 136
Score = 33.1 bits (72), Expect = 0.027
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 160 KLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
KL+L GDS VGKS L LRF D + + ST+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTI 47
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 68.9 bits (161), Expect = 4e-13
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Frame = +3
Query: 225 YVHRELHQYY----GVDFKIRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIV 392
YV+R+ + Y G DF + V ++ K + LQ+WDT GQERF+++ ++YRGA ++V
Sbjct: 28 YVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLV 87
Query: 393 YDCTDQDSFSNVKQWLEEMDRYAC----DNVNKLLVGNKCDL 506
YD + SF + W +E A + +L+GNK D+
Sbjct: 88 YDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDV 129
Score = 28.3 bits (60), Expect = 0.77
Identities = 10/35 (28%), Positives = 25/35 (71%)
Frame = +1
Query: 151 YLFKLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
+L K+++ G+SGVGK+ + ++ + +++ Y +T+
Sbjct: 7 HLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATI 41
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 68.5 bits (160), Expect = 6e-13
Identities = 29/71 (40%), Positives = 45/71 (63%)
Frame = +3
Query: 234 RELHQYYGVDFKIRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQD 413
RE G DF + V ++ K + LQ+WDT GQERF+++ ++YRGA +IVY+ +
Sbjct: 35 REYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSK 94
Query: 414 SFSNVKQWLEE 446
SF +V+ W +E
Sbjct: 95 SFDSVENWRQE 105
Score = 34.3 bits (75), Expect = 0.012
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 133 MNPEYDYLFKLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
M+ + K+++ GDSGVGK+CL +F + ++ Y +T+
Sbjct: 1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATI 41
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 60.9 bits (141), Expect = 1e-10
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = +3
Query: 285 LNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVK-QWLEEMDRYA 461
++GK+++L +WDT GQE ++ + Y AH I++ + DS NV +W+EE++
Sbjct: 51 VDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINT-L 109
Query: 462 CDNVNKLLVGNKCDL 506
C NV +LVG K DL
Sbjct: 110 CPNVPFILVGMKADL 124
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 58.8 bits (136), Expect = 5e-10
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +3
Query: 270 IRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNV-KQWLEE 446
I + ++G +I+L +WDT GQE + + S Y H I+I + +DS NV +WL E
Sbjct: 51 IHDIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPE 110
Query: 447 MDRYACDNVNKLLVGNKCDL 506
+ C V +LV KCDL
Sbjct: 111 VSS-NCPGVKLVLVALKCDL 129
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 56.0 bits (129), Expect = 3e-09
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +3
Query: 270 IRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEE 446
+ V+++G+ I+L +WDT GQE + + Y +H ++I + +S NV++ W+ E
Sbjct: 44 VADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISE 103
Query: 447 MDRYACDNVNKLLVGNKCDL 506
+ + C N+ LLVG K DL
Sbjct: 104 VLHF-CSNLPILLVGCKVDL 122
Score = 32.7 bits (71), Expect = 0.036
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 160 KLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
KL++ GD GK+CL + F+ T+ E Y+ T+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV 39
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 54.4 bits (125), Expect = 1e-08
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 282 DLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEMDRYA 461
+++G+ L + DT GQE + + Y R G ++VY+ T + SF + + +++ R
Sbjct: 50 EIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVK 109
Query: 462 -CDNVNKLLVGNKCDLTLKRL 521
D +LV NKCDL +R+
Sbjct: 110 DKDTFPVVLVANKCDLEAERV 130
Score = 29.9 bits (64), Expect = 0.25
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 133 MNPEYDYLFKLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
M Y +KL++ GD GVGKS L ++ + + Y T+
Sbjct: 1 MRSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTI 41
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 53.6 bits (123), Expect = 2e-08
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +3
Query: 270 IRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEE 446
+ V+++G+ ++L +WDT GQE + + Y +H I+I + DS NV++ W+ E
Sbjct: 44 VADVEVDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISE 103
Query: 447 MDRYACDNVNKLLVGNKCDL 506
+ + C ++ LLV K DL
Sbjct: 104 VLHF-CSSLPILLVACKADL 122
Score = 32.7 bits (71), Expect = 0.036
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 160 KLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
KL++ GD GK+CL + F+ T+ E Y+ T+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV 39
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 53.6 bits (123), Expect = 2e-08
Identities = 24/74 (32%), Positives = 41/74 (55%)
Frame = +3
Query: 300 IKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEMDRYACDNVNK 479
I +WDT GQE+ + YY II++D T + ++ NV W ++ R C+N+
Sbjct: 58 ICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPI 116
Query: 480 LLVGNKCDLTLKRL 521
+L GNK D+ +++
Sbjct: 117 VLCGNKVDVKERKV 130
Score = 29.5 bits (63), Expect = 0.33
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 157 FKLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
FKL+L GD G GK+ R + + YI+T+
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATL 42
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 52.4 bits (120), Expect = 4e-08
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +3
Query: 258 VDFKIRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQW 437
V F + TV K IK +WD GGQ++ + + Y+ G G+I V D D + S +Q
Sbjct: 53 VGFNVETVTY--KNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQE 110
Query: 438 LEEM--DRYACDNVNKLLVGNKCDL 506
L + DR D + L++ NK DL
Sbjct: 111 LHRIISDREMRDCL-LLVLANKQDL 134
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 50.0 bits (114), Expect = 2e-07
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +3
Query: 273 RTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEE-M 449
+ + G+ +I DT GQ+ + + S + G HG ++VY T + SF VK ++ +
Sbjct: 45 KNIKYKGQEFATEIIDTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKIL 104
Query: 450 DRYACDNVNKLLVGNKCDLTLKR 518
+ + V ++VGNK DL ++R
Sbjct: 105 NHTGTEWVPIVVVGNKSDLHMQR 127
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 160 KLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
++ + G VGKS L +++ ++ + ESY T+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTI 39
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 48.8 bits (111), Expect = 5e-07
Identities = 24/89 (26%), Positives = 43/89 (48%)
Frame = +3
Query: 237 ELHQYYGVDFKIRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDS 416
E Q GV+F +T+ + I IWD GGQ F + A I+ ++D + + +
Sbjct: 38 ESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKST 97
Query: 417 FSNVKQWLEEMDRYACDNVNKLLVGNKCD 503
+++K+W + + V +L+G K D
Sbjct: 98 LNSIKEWYRQARGFNKTAV-PILIGTKYD 125
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 47.6 bits (108), Expect = 1e-06
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 VDFKIRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQW 437
+ F + TV+ + I +WD GGQ++ + + Y++ GII V D D++ S +
Sbjct: 49 IGFNVETVEY--RNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEE 106
Query: 438 LEEM-DRYACDNVNKLLVGNKCDL 506
L+ M + + L+ NK DL
Sbjct: 107 LQRMLNEDELRDALLLVFANKQDL 130
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 46.8 bits (106), Expect = 2e-06
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 288 NGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNV-KQWLEEMDRYAC 464
N K I+L +WDT GQE + + Y ++ I++ + S +NV ++W E+ + C
Sbjct: 60 NSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHF-C 118
Query: 465 DNVNKLLVGNKCDLTLKR 518
+LVG K DL R
Sbjct: 119 PRTPIVLVGLKADLRKDR 136
Score = 35.5 bits (78), Expect = 0.005
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 160 KLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
KL++ GD G GK+CL + F+ T+ E Y+ T+
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTV 47
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 41.9 bits (94), Expect = 6e-05
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 276 TVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEEMD 452
TV + + L ++DT GQE + + Y ++ + T SF NVK+ W E+
Sbjct: 43 TVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVH 102
Query: 453 RYACDNVNKLLVGNKCDL 506
+ C V L+VG + DL
Sbjct: 103 HH-CPGVPCLIVGTQIDL 119
Score = 28.7 bits (61), Expect = 0.58
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 160 KLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
K ++ GD VGK+CL + + + + Y+ T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTV 36
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 41.9 bits (94), Expect = 6e-05
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +3
Query: 264 FKIRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLE 443
F+IRT+++ G ++ IWD GGQ+ + +Y+ II V D D + L+
Sbjct: 50 FQIRTLEVEG--LRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQ 107
Query: 444 EM 449
E+
Sbjct: 108 EL 109
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 35.1 bits (77), Expect = 0.007
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 300 IKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEE-MDRYACDNVN 476
++ +D GG ++ + + Y+ +GI+ + DC D + S K L+ + V
Sbjct: 64 VRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVP 123
Query: 477 KLLVGNKCD 503
L++GNK D
Sbjct: 124 FLILGNKID 132
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 139 PEYDYLFKLLLKGDSGVG 192
P+YDYL ++ GD G G
Sbjct: 157 PKYDYLLPIIADGDMGFG 174
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 393 YDCTDQDSFSNVKQWLEEMDRYACDNVNKLLVGN 494
+D +D F ++ E CDNV LVGN
Sbjct: 73 FDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGN 106
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 282 DLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYD 398
D+ GKT Q DT G F ++ + G+++V D
Sbjct: 203 DMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVD 241
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +3
Query: 414 SFSNVKQWLEEMDRYACDNVNKLLVGNK 497
S S K+WL +++Y C + + ++G +
Sbjct: 342 SHSTSKEWLSSLEQYHCTYLFRDVIGRR 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,806
Number of Sequences: 5004
Number of extensions: 42123
Number of successful extensions: 151
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -