Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0138
         (541 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            95   1e-21
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    46   8e-07
Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...    33   0.008
X87410-1|CAA60857.1|  498|Anopheles gambiae maltase-like protein...    23   6.5  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   8.7  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 95.1 bits (226), Expect = 1e-21
 Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
 Frame = +3

Query: 225 YVHRELHQYY----GVDFKIRTVDLNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIV 392
           +V  + H+Y     G  F  +T+ ++  T+K +IWDT GQER+ ++   YYRGA   I+V
Sbjct: 44  FVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV 103

Query: 393 YDCTDQDSFSNVKQWLEEMDRYACDNVNKLLVGNKCDLTLKRLSDFSTA 539
           YD  + DSF+  K W++E+ R A  N+   L GNK DL   R+ D+  A
Sbjct: 104 YDIQNSDSFARAKTWVKELQRQASPNIVIALAGNKADLANSRVVDYEEA 152



 Score = 32.3 bits (70), Expect = 0.011
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +1

Query: 157 FKLLLKGDSGVGKSCL*LRFADDTYTESYISTM 255
           FKL+L G+S VGKS L LRF    + E   ST+
Sbjct: 25  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTI 57


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 46.0 bits (104), Expect = 8e-07
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 285 LNGKTIKLQIWDTGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNV-KQWLEEMDRYA 461
           ++G  + L +WDT GQE +  +    Y      +I Y      SF NV  +W  E+ ++ 
Sbjct: 49  VDGVQVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEI-KHH 107

Query: 462 CDNVNKLLVGNKCDL 506
           C +   +LVG K DL
Sbjct: 108 CPDAPIILVGTKIDL 122



 Score = 28.7 bits (61), Expect = 0.13
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 160 KLLLKGDSGVGKSCL*LRFADDTYTESYIST 252
           K ++ GD  VGK+C+ + +  D++   Y+ T
Sbjct: 8   KCVVVGDGTVGKTCMLISYTTDSFPGEYVPT 38


>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score = 32.7 bits (71), Expect = 0.008
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 321 TGGQERFKTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEEMDRYACDNVNKLLVGNK 497
           + GQE +  +    Y      ++ +      SF NVK+ W+ E+  + C     LLVG +
Sbjct: 1   SAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQ 59

Query: 498 CDL 506
            DL
Sbjct: 60  IDL 62


>X87410-1|CAA60857.1|  498|Anopheles gambiae maltase-like protein
           Agm1 protein.
          Length = 498

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 396 DCTDQDSFSNVKQWLE 443
           D T Q  + N+K+WL+
Sbjct: 329 DTTGQQFYDNIKRWLD 344


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 428 ETVVRGDGSLRL*QCEQTARREQV*LN 508
           ETVV+G GS  L   E+   R ++ LN
Sbjct: 316 ETVVKGVGSGHLYYYEENGDRRKITLN 342


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,725
Number of Sequences: 2352
Number of extensions: 10287
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 50320221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)