Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0138
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.6  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   8.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 238 SRCTYHQRILATDMISQLQSHLSGV 164
           S C     I +TD+I   Q H+ GV
Sbjct: 520 SACRPRHEIRSTDVIPGTQEHVCGV 544


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 411 DSFSNVKQWLEEMDRYACDN 470
           +++  VK+W + +D YA +N
Sbjct: 270 ETYELVKEWRDFVDNYAEEN 289


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 504 SHTCSRRAVCSHCHKR 457
           +HT  +   C  CHKR
Sbjct: 3   THTGEKPFECPECHKR 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,765
Number of Sequences: 438
Number of extensions: 2632
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)