Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0137
         (708 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    23   2.4  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    23   2.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   7.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   7.4  

>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 270 AVPGVCVIAVVYASHRLSPHRSARDPHGPAERRLSV 377
           A+P + VI   YAS  L   R  R+P+G +  R S+
Sbjct: 229 ALP-LAVIIFSYASILLEIRRRTRNPYGDSVTRSSL 263


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 270 AVPGVCVIAVVYASHRLSPHRSARDPHGPAERRLSV 377
           A+P + VI   YAS  L   R  R+P+G +  R S+
Sbjct: 229 ALP-LAVIIFSYASILLEIRRRTRNPYGDSVTRSSL 263


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
 Frame = +3

Query: 312 HRLSPHRSARDPHGP--AERRLSVTSSFC 392
           H L PHR    P  P  + R L +    C
Sbjct: 13  HHLEPHRMQIKPQSPSSSSRILDIPCKVC 41


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
 Frame = +3

Query: 312 HRLSPHRSARDPHGP--AERRLSVTSSFC 392
           H L PHR    P  P  + R L +    C
Sbjct: 13  HHLEPHRMQIKPQSPSSSSRILDIPCKVC 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,221
Number of Sequences: 336
Number of extensions: 3138
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)