Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0137
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   2.6  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   3.5  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    26   4.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   8.0  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   8.0  

>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 699 RVSRFEVPDGNLTQALKNLTHQRFFLRDVRDSNY 598
           + S  ++ + N+T++L  L  +   LRD R S+Y
Sbjct: 448 KYSNRKIKNSNITRSLNRLVRKNRVLRDARGSSY 481


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 383 TSDRQTALGWTVRVARGPMR 324
           T  R  A+G TVR+ RGPM+
Sbjct: 723 TIGRDKAIGATVRIRRGPMK 742


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 568 FTTLNNNNNSMRIIYIYFFIHHTDVTNSTLHS 473
           FT   N+N S+R++Y   F  + ++    LHS
Sbjct: 262 FTYCKNDNPSIRLLYSECFFSYAEIYFPCLHS 293


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = -3

Query: 577 ITRFTTLNNNNNSMRIIYIYFFIHHTDVTNSTLHSAYIYIHSSI*GIV*CESAP 416
           ++ F T  N      + + + FIH     N  + + ++++H+    I+ C S P
Sbjct: 778 LSHFFTTGNQAAISSLDWNFAFIHSKSAENQAISAIFMFLHTVGAPILTCISIP 831


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 18/60 (30%), Positives = 21/60 (35%)
 Frame = -3

Query: 421 APRPLGHVAQQKELVTDRRRSAGPCGSRADRCGDKR*EAYTTAITHTPGTAPQPLSSDTT 242
           AP PL       EL T   R  G C S  +    +     +T  T  P   P    S TT
Sbjct: 482 APEPLSQQRDSFELCTTGYRDTGSCTSDDEDSIHEPYRPASTQPTENPPAMPDHNGSPTT 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,251
Number of Sequences: 5004
Number of extensions: 47902
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)