Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0137
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1290 - 25927667-25928950                                         31   0.90 
10_08_0886 + 21307977-21308007,21308113-21308240                       29   3.6  
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980...    29   3.6  
01_03_0208 + 13797780-13797931,13798234-13798288,13798807-13799943     29   3.6  
02_04_0274 - 21455942-21456325,21456453-21456521,21456622-214566...    28   8.4  

>08_02_1290 - 25927667-25928950
          Length = 427

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 421 APRPLGHVAQQKELVTDRRRSAGPCGSRADRCGDKR*EAYT 299
           APR +G +A   +LV  RR  A P G+R D  G  R +  T
Sbjct: 384 APRQVGAIAGGAQLVGQRRGRAAPTGARDDDDGGVRLQKQT 424


>10_08_0886 + 21307977-21308007,21308113-21308240
          Length = 52

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 153 EPAAGVAAQVEAPDLVVDEDGQHERNGGQPPHELEWV 43
           +PAA  A Q E        DG HER  G  P + +W+
Sbjct: 8   KPAAVAAPQRERGGRGAAADGVHEREAGDRPAKAQWM 44


>10_06_0028 -
           9802362-9802475,9802919-9803090,9803167-9803208,
           9803344-9804011,9804098-9804418,9804495-9804833,
           9804856-9805109,9805300-9805510
          Length = 706

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 339 RDPHGPAERRLSVTSSFCCAT*PRGRGALSHHTIP 443
           R  H P +RR S TS+   A  P G  A+ H T P
Sbjct: 343 RVEHNPTQRRSSCTSTEAPAEQPEGPAAVDHITEP 377


>01_03_0208 + 13797780-13797931,13798234-13798288,13798807-13799943
          Length = 447

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 46  PLKFVWWLPAIPFMLSIFIYDEIRRF 123
           PLK   WL +IP++LS F++  IR F
Sbjct: 314 PLKEAAWLVSIPWILSFFVWLFIRLF 339


>02_04_0274 -
           21455942-21456325,21456453-21456521,21456622-21456687,
           21456796-21456861,21456982-21457149,21457262-21457351,
           21457578-21457622,21458112-21458747
          Length = 507

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 155 SSQPPGLXXXXXRLISS*MKMDNMNGMAGSHHTNLSGYILKPLS 24
           SSQP  L       I S +++D     +G HH NLS  I  PL+
Sbjct: 205 SSQPHHLNQHVTPSIDS-LQIDQKEFSSGLHHLNLSSLISGPLA 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,657,375
Number of Sequences: 37544
Number of extensions: 350583
Number of successful extensions: 994
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)