Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0137
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   3e-16
SB_53499| Best HMM Match : Cation_ATPase_C (HMM E-Value=2e-23)         79   3e-15
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                  36   0.024
SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           29   2.8  
SB_40279| Best HMM Match : zf-MYM (HMM E-Value=0.66)                   29   4.9  

>SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 31/57 (54%), Positives = 41/57 (71%)
 Frame = +1

Query: 1   FLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYDEIRRFYLRRNPGGWLEQETYY 171
           FL YTPG+   L +Y L   WW   +P+ + IF+YDE+RR+ LR+ PGGW+EQETYY
Sbjct: 467 FLLYTPGLSTALSLYGLNASWWFIGVPYSILIFVYDEVRRYILRKYPGGWVEQETYY 523


>SB_53499| Best HMM Match : Cation_ATPase_C (HMM E-Value=2e-23)
          Length = 109

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 33/48 (68%), Positives = 37/48 (77%)
 Frame = +1

Query: 1   FLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYDEIRRFYLRRNPG 144
           F SYTPGM  GLRMYPL + WW PA+PF L I+IYDE RR+ LRR PG
Sbjct: 61  FFSYTPGMSNGLRMYPLNWQWWFPAMPFSLIIWIYDECRRWILRRYPG 108


>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1003

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +1

Query: 1   FLSYTPGMDKGLRMYPLKFV 60
           F SYTPGM  GLRMYPL  +
Sbjct: 885 FFSYTPGMSNGLRMYPLNHI 904


>SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 457

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 288 HIHRERHRNLCPPIQQHKMNIMYAVTN*CTTVDSDRRCLII 166
           HI+     +  PPI+Q K+++ + + + C  V +   CLII
Sbjct: 89  HINPTHAPSTIPPIKQEKLDVQFLIISICAPVAALIVCLII 129


>SB_40279| Best HMM Match : zf-MYM (HMM E-Value=0.66)
          Length = 364

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 198 TVDSDRRCLIISLLFEPAAGVAAQVE-APDLVVDEDGQHERNGGQPPHELEWVHPQ 34
           T D+D   +   LL EP   V  Q++ A + ++ E+G     GG+  +E E  H Q
Sbjct: 263 TDDADDSTVSGILLPEPGVNVRDQIQSAVERLISEEGNDNHAGGEVNNEGEEAHRQ 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,526,810
Number of Sequences: 59808
Number of extensions: 412481
Number of successful extensions: 1045
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)