Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0137
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    32   0.32 
At4g00450.1 68417.m00062 expressed protein                             28   7.0  
At1g54840.1 68414.m06257 expressed protein                             28   7.0  
At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ...    27   9.2  

>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles:  PF00271 helicase conserved
           C-terminal domain, PF01535 PPR repeat, PF00270:
           DEAD/DEAH box helicase
          Length = 1145

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 349 TVQPSAVCLSLVPSVAQRDREDAARSRITLSLISNYVCIYMHCGVWSLLRLC 504
           TVQPSA  +SL P+ ++ D +     +     + +Y CI  H      LR C
Sbjct: 350 TVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRC 401


>At4g00450.1 68417.m00062 expressed protein
          Length = 2124

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 253  RTEVAVPFPVYV*SLSCTLLTACHRIGPRATRTVQPS 363
            R  +    P+ + SL C+L    H + P A   VQPS
Sbjct: 1986 RWRIQAAMPILLPSLRCSLSCQPHSVPPTALTLVQPS 2022


>At1g54840.1 68414.m06257 expressed protein
          Length = 349

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 321 TSGEKRTRQRLHIHRERHRNLCPP 250
           T+G KR ++  H+   + R+LCPP
Sbjct: 285 TTGGKRVKRYSHVFEMQTRSLCPP 308


>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 236

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 562 TLNNNNNSMRIIYIYFFIHHTDVTNSTLHSAYIYIHSSI*GIV 434
           T+N+   + ++ YI  FI HTD  N       +++  ++ G++
Sbjct: 80  TVNSVGATFQLCYIILFIMHTDKKNKMKMLGLLFVVFAVVGVI 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,754,566
Number of Sequences: 28952
Number of extensions: 256766
Number of successful extensions: 678
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)