Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0136
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    33   0.032
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    31   0.22 
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.7  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   2.7  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   3.6  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   6.3  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   6.3  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   6.3  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   8.4  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    25   8.4  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   8.4  

>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 33.5 bits (73), Expect = 0.032
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 304 HNDETENGKTCPENTYKTHFEAVVSVCDL 390
           HN +TENG+T PENT  T+  A  +V +L
Sbjct: 434 HNAQTENGQTLPENTDDTNSNATSAVPNL 462


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 22/89 (24%), Positives = 39/89 (43%)
 Frame = +2

Query: 248  EIKRLPSRQPVRVQNLHEDITTRPKTEKPVQKTRTKLTSKPLSVSVIYDYPETVYNTKPP 427
            +I  L  R  VRV+     +  +P T   ++  R  + S  +    +YD  +  Y T  P
Sbjct: 1009 QIIGLLKRYMVRVEKEFFKLQLKPPTSVQIKALRQFIASAYIDQVALYDKEKRGYVTLFP 1068

Query: 428  ASSEKPFIVYVPQKNPNVIANDISSTSCH 514
            + SE   + +VP +  N+ +  +   S H
Sbjct: 1069 SGSE--VVQFVPDRTYNIDSEYVVYLSLH 1095


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 278 VRVQNLHEDITTRPKTEKPVQKTRTKLTS-KPLSVSVIYDYPETVYNTKPPASSEKP 445
           V ++N+H++I        PVQ++ +  +   PLS   +   P    + KPP   + P
Sbjct: 144 VFMKNIHQNIARNSTVPNPVQESNSSSSQPDPLSFPYLPPTPAEDEHKKPPLKIQLP 200


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +2

Query: 287  QNLHEDITTRPKTEKPVQKTRTKLTSKPLSVSVIYDYPETVYNTKPP---ASSEKP 445
            QN+ ++  TR   E PV       T  P SVS +        NT  P   A+SE P
Sbjct: 1165 QNVVDESVTRVVKELPVPAPAAPQTLNPPSVSTVQQSKPIESNTHTPEVKATSESP 1220


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +2

Query: 383 VIYDYPETVYNTKPPASSEKPFIVYVPQKNPNV 481
           ++    ++++++ PP  SEK F+V   +  PN+
Sbjct: 792 IVQSTAKSIWHSDPPKESEKGFVVLRSRPRPNL 824


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 598 RCHSVFC*KQAVALLWXSHFEN*CRS 521
           R HS+FC  Q  +++W   ++  C S
Sbjct: 368 RIHSLFCGAQVTSVIWSRRYKEFCYS 393


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 727 RSWLIWPLKILGRF 686
           R WL WP+K LGRF
Sbjct: 755 RKWL-WPIKCLGRF 767


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +2

Query: 287 QNLHEDITTRPKTEKPVQKTRTKLTSKPLSVSVIYDYPETVYNTKPPASSEKPFIVYVPQ 466
           +  +E+   + +TEK V  T  K +    SVS     P + +N         PF     +
Sbjct: 742 KTFNEEAVKQKETEKEVPPTGPKASEIKDSVSSNNAVPSSTFN------FVSPFAAVSEK 795

Query: 467 KNPNVIANDISSTS 508
            N N I ND + T+
Sbjct: 796 TNENNIPNDTTKTN 809


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 481 HIRILLWHVNYKRFFRTGRRFCI 413
           HI  L +H+  K+   T +RFCI
Sbjct: 270 HIFELRYHIMIKKCLETSKRFCI 292


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 308 TTRPKTEKPVQKTRTKLTSKPLSVSVIYDY--PETVYNTKPPASSEKPF 448
           T  P+T  P  +T  K +S+P  +S       P  V + KP     K F
Sbjct: 364 THSPRTRSPNVQTHKKTSSQPSDLSSFAQLLSPPQVLSPKPNGGGHKSF 412


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 651 YNLFWMGGNYYQNRPSILSGHMS 719
           YN    GG  Y  R  IL GH S
Sbjct: 88  YNCLGTGGGLYHFRDQILKGHTS 110


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = -1

Query: 446 TVFQNWQEVLYYTRFLDNHKSQTLTTASK*V--LYVFSGQVFPFSVSSLCLHEDFELGQA 273
           ++   +Q VL   ++L    S+TL+TAS     ++V+   +F F+ S+  +HE  +L   
Sbjct: 582 SIKSEYQVVLKSIKYLFKRVSETLSTASLECFRIFVYRSALFAFNKSN--VHEIIQL--- 636

Query: 272 ALKEGV*FPRFL 237
            L E V +  FL
Sbjct: 637 -LNEPVKYHNFL 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,978
Number of Sequences: 5004
Number of extensions: 51906
Number of successful extensions: 128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)