Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0136
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8819| Best HMM Match : I-set (HMM E-Value=0) 31 1.3
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 29 2.9
SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 28 8.9
>SB_8819| Best HMM Match : I-set (HMM E-Value=0)
Length = 1789
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 329 KPVQK--TRTKLTSKPLSVSVIYDYPETVYNTKPPASSEKPFI 451
KPV+K + +LTSKP+ +S+ D PET T ++ +P I
Sbjct: 248 KPVEKEVSVVELTSKPIELSMKLDVPETKIETAKYEATIEPVI 290
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 329 KPVQK--TRTKLTSKPLSVSVIYDYPETVYNTKPPASSEKPFI 451
KPV+K + +LTSKP+ +S+ D PET T ++ +P I
Sbjct: 327 KPVEKEVSVVELTSKPIELSMKLDVPETKIETAKYEATIEPVI 369
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 329 KPVQK--TRTKLTSKPLSVSVIYDYPETVYNTKPPASSEKP 445
KPV+K + +LTSKP+ +S+ D PET T+ ++ +P
Sbjct: 406 KPVEKEVSVAELTSKPIELSMKLDVPETKIETEKYEATIEP 446
>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 248 EIKRLPSRQPVRVQNLHEDITTRPKTEKPVQKTRTKLTSK 367
+IK+ P +P V+ + T PK EKP +K+ +K ++K
Sbjct: 500 KIKKEPPAKPKPVKPPKQQATKTPKAEKPPKKSASKRSAK 539
>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 257 RLPSRQPVRVQNLHEDITTRPKTEKPVQKTRTKLTSKPLSVS 382
R P + ++ E + R +P +K+R K+TSKP VS
Sbjct: 84 RTPKSHSRKTSSIDEQLRIRKDHGEPTKKSRLKMTSKPSYVS 125
>SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 368 PLSVSVIYDYPETVYNTKPPASSEKPFIVYVPQK 469
PL + +Y Y Y T PP S K F+ P++
Sbjct: 194 PLPIEPLYAYQPLPYPTAPPVSQSKTFLHPTPEQ 227
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 251 IKRLPSRQPV-RVQNLHEDITTRPKTEKPVQKTRTKLTSKPL 373
++ P +P+ R + E++ RPKTEKP ++ L KPL
Sbjct: 5445 VEEKPLEKPITRKEKKVEEV--RPKTEKPTEREAKSLKEKPL 5484
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 251 IKRLPSRQPV-RVQNLHEDITTRPKTEKPVQKTRTKLTSKPL 373
++ P +P+ R + E++ +PKTEKP ++ L KPL
Sbjct: 5604 VEEKPLEKPITRKEKKVEEV--KPKTEKPTEREAKPLKEKPL 5643
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 251 IKRLPSRQPV-RVQNLHEDITTRPKTEKPVQKTRTKLTSKPL 373
++ P +P+ R + E++ +PKTEKP ++ L KPL
Sbjct: 5710 VEEKPLEKPITREEKKVEEV--KPKTEKPTEREAKPLKEKPL 5749
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 251 IKRLPSRQPV-RVQNLHEDITTRPKTEKPVQKTRTKLTSKPL 373
++ P +P+ R + E++ +PKTEKP ++ L KPL
Sbjct: 6040 VEEKPLEKPITRKEKKVEEV--KPKTEKPTEREAKPLKEKPL 6079
>SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 317 PKTEKPVQKTRTKLTSKPLSVSVIYDYPETVYNTKPPASSEKPFIVYVPQKNPNVIANDI 496
P EKPV T L + S VY+ + PA+++ +++ Q N ++IA+ +
Sbjct: 45 PDIEKPVTAKCTALCNPDRGTSCSKMVLVDVYSRRKPATAQHIYVIIDEQSNTSLIASKL 104
Query: 497 S 499
+
Sbjct: 105 A 105
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 308 TTRPKTEKPVQKTRTKLTSKPLSVSVIYDYPETVYN--TKPPASSEKP 445
TT PKT P + T K P++ + P T N T PA+++ P
Sbjct: 1814 TTTPKTTTPKKTTAAKKAPLPVTHATTSHAPSTTENPTTARPATTKAP 1861
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,886,545
Number of Sequences: 59808
Number of extensions: 379978
Number of successful extensions: 1571
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -