Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0136
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.2  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   2.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   6.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   6.8  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 311 TRPKTEKPVQKT-RTKLTSKPLSVSVIYDYPETVYNTKPPASSEKPFIVYVPQ 466
           +RP+  +P Q T +  +  K + +SV +DY   VY    P +     +VY+ Q
Sbjct: 169 SRPR--EPAQTTSKAGIHRKKVLLSVWWDYKGIVYFELLPPNRTINSVVYIEQ 219


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 23  TRFLCAFRRKSDHNNRKYKNH 85
           ++ + +   K+ HNN  YKN+
Sbjct: 312 SKIISSLSNKTIHNNNNYKNY 332


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 309 RRDRKRKNLSRKHVQNSLRS 368
           R +RKR + SR+  QNS ++
Sbjct: 32  RTNRKRNSRSREREQNSYKN 51


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 309 RRDRKRKNLSRKHVQNSLRS 368
           R +RKR + SR+  QNS ++
Sbjct: 32  RTNRKRNSRSREREQNSYKN 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,696
Number of Sequences: 438
Number of extensions: 4350
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)