Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0135
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.5  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.1  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   6.1  

>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +1

Query: 127 LHWPFDCRVGHRCPTRRTEVIMSI---SVTKAPPLPS 228
           LH PF    G  CP      +++I   S+   PP+PS
Sbjct: 238 LHDPFSQTFGKECPISTAPPVLNIGDRSLETPPPIPS 274


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 573 FKWVICMTPKYVRYFYIGSNNSSLSKK 493
           F+W   +   YV Y+++ S++  L+ K
Sbjct: 8   FRWAFLIATVYVAYYFLVSSDKKLATK 34


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 189 NYFSAPRRAPVTYTTVKGPMQFFSCIICEVFLTSK 85
           NYF   +R P  + +  G + F  C++  +  TS+
Sbjct: 488 NYFKLKKRDPQQFRSASGRLGFMVCLLEILSFTSR 522


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 142 QRANAIFLMHNMRSFFDFE-IMNFV 71
           +RA +I   HN++S FD E I  FV
Sbjct: 887 ERATSIMTKHNLKSSFDIEAIKEFV 911


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,800
Number of Sequences: 5004
Number of extensions: 44052
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)