Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0135
         (583 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2373|AAF53316.1|  301|Drosophila melanogaster CG16853-P...    30   2.6  
M63450-1|AAA29051.1| 3005|Drosophila melanogaster zinc-finger ho...    29   4.6  
AE014135-89|AAF59339.2| 3005|Drosophila melanogaster CG1449-PA p...    29   4.6  
AY089338-1|AAL90076.1|  301|Drosophila melanogaster AT15148p pro...    28   8.0  

>AE014134-2373|AAF53316.1|  301|Drosophila melanogaster CG16853-PA
           protein.
          Length = 301

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
 Frame = +3

Query: 258 RNLRNTI--RLSQSLLDISAP--LITTKST*LLQCLKIFFSCRVKYSFRP*FLYSEITKS 425
           R LR TI  R+ +S+ D  A   L    +   + CL  F +  +  SF   F Y  +T S
Sbjct: 202 RQLRQTICARIGRSICDFVAAFCLCLQVNKDCVFCLGFFVAFVISASFLTAFFYRTLTFS 261

Query: 426 AHLILPYIMPDSNNLRQG*KAQIFLTGNYYY 518
           +  +     P S  +R    A +   G YYY
Sbjct: 262 SSPVRVVANPVSGTMRYE-LATLRFNGGYYY 291


>M63450-1|AAA29051.1| 3005|Drosophila melanogaster zinc-finger
           homeodomain protein 2 protein.
          Length = 3005

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 162 PVTYTTVKGPMQFFSCIICEVFLTS 88
           P+T T  K PM F+SC++C+ + T+
Sbjct: 885 PLTKTD-KWPMAFYSCLVCDCYSTN 908


>AE014135-89|AAF59339.2| 3005|Drosophila melanogaster CG1449-PA
           protein.
          Length = 3005

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 162 PVTYTTVKGPMQFFSCIICEVFLTS 88
           P+T T  K PM F+SC++C+ + T+
Sbjct: 885 PLTKTD-KWPMAFYSCLVCDCYSTN 908


>AY089338-1|AAL90076.1|  301|Drosophila melanogaster AT15148p
           protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
 Frame = +3

Query: 258 RNLRNTI--RLSQSLLDISAP--LITTKST*LLQCLKIFFSCRVKYSFRP*FLYSEITKS 425
           R LR TI  R+ +S+ D  A   L    +   + CL  F +  +  SF   F Y  ++ S
Sbjct: 202 RQLRQTICARIGRSICDFVAAFCLCLQVNKDCVFCLGFFVAFVISASFLTAFFYRTLSFS 261

Query: 426 AHLILPYIMPDSNNLRQG*KAQIFLTGNYYY 518
           +  +     P S  +R    A +   G YYY
Sbjct: 262 SSPVRVVANPVSGTMRYE-LATLRFNGGYYY 291


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,484,598
Number of Sequences: 53049
Number of extensions: 431282
Number of successful extensions: 1030
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)