Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0135
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   3.8  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   3.8  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   3.8  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   3.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.9  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 424 DFVISEYKNQGLNEYLTLQLKKILRH*SNYVDLVVI 317
           ++  S Y N   N Y     KK+  +  NY++ + I
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 424 DFVISEYKNQGLNEYLTLQLKKILRH*SNYVDLVVI 317
           ++  S Y N   N Y     KK+  +  NY++ + I
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 424 DFVISEYKNQGLNEYLTLQLKKILRH*SNYVDLVVI 317
           ++  S Y N   N Y     KK+  +  NY++ + I
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 424 DFVISEYKNQGLNEYLTLQLKKILRH*SNYVDLVVI 317
           ++  S Y N   N Y     KK+  +  NY++ + I
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 481 YPCLKLLLSGIMYGNIRCA 425
           Y C+ LL SGI+     CA
Sbjct: 407 YDCVTLLFSGIVGFGAYCA 425


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 481 YPCLKLLLSGIMYGNIRCA 425
           Y C+ LL SGI+     CA
Sbjct: 407 YDCVTLLFSGIVGFGAYCA 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,020
Number of Sequences: 438
Number of extensions: 3110
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)