Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0134
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          28   6.5  

>SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 986

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +1

Query: 217 FPWRCSRRRQWYCSVYAIVTYKAADCHPGVPVSVYG 324
           F W C  R   Y  VY I+T     C P V  S  G
Sbjct: 243 FNWSCRHRLARYVHVYTIITMATVTCQPSVHASYEG 278


>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 213  NISMAVLSKKAVVLLCICNSYIQGC 287
            ++  AV     ++L+CIC++YI GC
Sbjct: 1855 SVMSAVTDNWPLILVCICSAYIMGC 1879


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 106  TGNSCTSGDSVCD*GDRC 159
            T  SCTS D+VCD  D C
Sbjct: 3628 TRGSCTSSDNVCDFSDDC 3645


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,759,281
Number of Sequences: 59808
Number of extensions: 466001
Number of successful extensions: 1229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)