Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0134
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41559-5|AAC24258.1|  217|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain pro...    28   5.7  
AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain pro...    28   5.7  
U58755-1|AAB00691.3|  403|Caenorhabditis elegans Nematode astaci...    28   7.5  
AL032652-8|CAA21706.1|  277|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U41559-5|AAC24258.1|  217|Caenorhabditis elegans Hypothetical
           protein C26B2.2 protein.
          Length = 217

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -3

Query: 249 PLPSSRAPPWKYSNVGIR*FTFSSFMKAPLTAVASITNTISACT 118
           P PSS++PP  Y N+G+  ++ SS   +  ++++S T+  S  T
Sbjct: 146 PAPSSKSPPTIYVNLGVI-YSSSSSHASDASSISSHTSVSSTFT 188


>AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform b
           protein.
          Length = 792

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 658 SPAGGSRTRSSAQRCAGAARIDS*TPRSLSILAACSIVAGTP 533
           S + G  T SSA+R A A R     P S +  AA +   GTP
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAAAAAAATAGGTP 213


>AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform a
           protein.
          Length = 794

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 658 SPAGGSRTRSSAQRCAGAARIDS*TPRSLSILAACSIVAGTP 533
           S + G  T SSA+R A A R     P S +  AA +   GTP
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAAAAAAATAGGTP 213


>U58755-1|AAB00691.3|  403|Caenorhabditis elegans Nematode astacin
           protease protein 8 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 288 CSLVCNYCIYRAVPLPSSRAPPWKYSN 208
           CSL C YC  +A  L +++A P  YSN
Sbjct: 365 CSLSCGYCTPKA--LQTAKASPPNYSN 389


>AL032652-8|CAA21706.1|  277|Caenorhabditis elegans Hypothetical
           protein Y63D3A.10 protein.
          Length = 277

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 253 CSVYAIVTYKAADCHPGVPVSVYGPFNNPQNVVEAVDKI 369
           C  + +  YK +  H    + V G  NNPQN+++ + K+
Sbjct: 104 CINHVLEVYKISKLHT---LKVIGAINNPQNLLKIIGKL 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,021,820
Number of Sequences: 27780
Number of extensions: 345856
Number of successful extensions: 869
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)