Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0134
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24590.2 68418.m02905 turnip crinkle virus-interacting protei...    28   7.0  
At4g26290.1 68417.m03782 expressed protein                             27   9.2  

>At5g24590.2 68418.m02905 turnip crinkle virus-interacting protein /
           TCV-interacting protein (TIP) contains Pfam PF02365: No
           apical meristem (NAM) domain; similar to NAC2
           (GI:6456751) {Arabidopsis thaliana}; identical to cDNA
           TIP mRNA,  GI:9408600
          Length = 451

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 573 SERGVQLSIRAAPAHRCAELLVREPPAGERLQ 668
           S+RG+++  R A A  CAE  V +  A  RL+
Sbjct: 338 SKRGIKIRARRAQAPGCAEQFVMQGDASRRLR 369


>At4g26290.1 68417.m03782 expressed protein 
          Length = 75

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 98  ANAPETPVQAEIVFVIEATAVNGAFINELKVNYL 199
           A  PETP+     FV+E    +  FI+   VNY+
Sbjct: 42  AEDPETPITPSSSFVVEIRLPSRMFISSSFVNYV 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,740
Number of Sequences: 28952
Number of extensions: 314124
Number of successful extensions: 816
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)