Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0132
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    27   1.4  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   1.8  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   5.5  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   5.5  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   7.2  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   7.2  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    25   9.5  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.5  

>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 204 WLNQFTLFRHNVFPKTLD--EPTLNKEFVKCDD 112
           W+ Q+ L+R+ V PKTL+  +  +N   + C D
Sbjct: 24  WVVQYKLYRNAVTPKTLEFLKQNINPSMLACVD 56


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 327 MGDNPHTTLRFDSDVGWQQIFVCSG 401
           +GDNP + +R  ++ GW  I V +G
Sbjct: 301 VGDNPESDIRGANNYGWTSILVRTG 325


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 322 SAIYDCLSPAIHISVRAVTSCHHICNRS 239
           + +  C+ P+IH ++  + +CH   N S
Sbjct: 636 TGVLGCVDPSIHNTLFCIYACHSSSNES 663


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 62  SPQRSVLYKIFDRFENRSSHFTNSLLRVGSSKVFGKT 172
           SP    L++  D     SSHF+ SLL    S +   T
Sbjct: 90  SPPGKSLHRFVDNLNPNSSHFSASLLPASLSSLCDST 126


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 234  IAQITILPILWLNQFTLFRHNVFPKTLDEPTLNKEFVKCDDLFSNLSKILY 82
            ++Q++   I +LN    F  N   +   E  LN  F+KCD+ F+     LY
Sbjct: 1060 VSQVSPEAIQFLN--ACFTVNADVRPTAEELLNHPFMKCDEEFNFKDTNLY 1108


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 192 FTLFRHNVFPKTLDEPTLNKEFVKCDDLFSNLSKILYRTD 73
           F L +  +     D     +   +C+D+FS LSKI+   D
Sbjct: 221 FFLQKERLAASFFDLVLYRESLEQCEDMFSTLSKIISAID 260


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 77  VLYKIFDRFENRSSHFTNSLL 139
           VL  +FDRF+ R S   +SLL
Sbjct: 398 VLPSLFDRFKERKSSLVHSLL 418


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 255 IYAIVVYIAQITILPILWLNQFTLFRHNVFPKTLD 151
           I A++V++      P  WL+ F++F H ++    D
Sbjct: 52  IMAVMVFLVIFDGFPF-WLSAFSIFSHYIYKINFD 85


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 452 SNRVETELLIIDGSHSFF 505
           +N VETE ++ DGS S F
Sbjct: 253 ANEVETEQIVFDGSASSF 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,570
Number of Sequences: 5004
Number of extensions: 52842
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)