Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0132
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0227 - 21684490-21685767                                         29   3.2  
07_01_0240 - 1749674-1750514,1751157-1752040                           28   4.2  
04_04_0852 + 28724891-28725184,28725683-28725801,28726868-28727294     27   7.3  
04_01_0053 + 551027-553024                                             27   7.3  

>09_06_0227 - 21684490-21685767
          Length = 425

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 14  LSAHRHPLRDIGLLQTSPQRSVLYKIFDRFENRSSHFTNSLLRVGSSKVF 163
           +SA  H ++DIG+L +  +  VL KI  R +N  S+F  +  R  +   F
Sbjct: 357 MSALAHVVKDIGILMSGDREIVLKKI-QRSQNSISYFLANKARAETLSKF 405


>07_01_0240 - 1749674-1750514,1751157-1752040
          Length = 574

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
 Frame = +3

Query: 207 ESAVSLSERCILRLHIW-------WQDVTARTDICIAGDKQSYIALRMGDNPHTTLRFDS 365
           + ++ L++ C   LH+        W+DVTA TD+ +     + I      NP TT    S
Sbjct: 350 KGSLQLTKACTASLHLQGSDSQLLWEDVTATTDVLLVCHIATTILEVKYPNPSTTASSSS 409

Query: 366 D 368
           D
Sbjct: 410 D 410


>04_04_0852 + 28724891-28725184,28725683-28725801,28726868-28727294
          Length = 279

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 252 IWWQDVTARTDICI-AGDKQSYIALRMGDNPH 344
           IWW +V    D C  AG    +  L++G  PH
Sbjct: 148 IWWLEVAGEIDFCFPAGSYSLFFRLQLG-RPH 178


>04_01_0053 + 551027-553024
          Length = 665

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 47  GLLQTSPQRSVLYKIFDRFENRSSHFTNSLLRV 145
           G  Q   Q+ V  K FDR EN+   FT+ L+ +
Sbjct: 372 GRTQEQRQQQVAVKKFDRDENQQRRFTDFLVEI 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,735,688
Number of Sequences: 37544
Number of extensions: 328631
Number of successful extensions: 770
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)