Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0132
(544 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_20788| Best HMM Match : IATP (HMM E-Value=4.8) 31 0.46
SB_5300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24) 29 3.2
SB_17055| Best HMM Match : DUF149 (HMM E-Value=2.7) 28 4.3
SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34) 28 5.7
SB_34913| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 334 SPIRSAIYDCLSPAIHISVRAVTSCHHICNRSIHRS 227
SP+ S ++ CLS +H+SVR C +C +H S
Sbjct: 1073 SPVCSRVFTCLSACVHLSVRV---CLPVCFSCVHLS 1105
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 337 LSPIRSAIYDCLSPAIHISVRAVTSCHHICNRSIHRS 227
LSP+ S ++ CL +H+SVR C +C +H S
Sbjct: 1109 LSPVCSRVFTCLYACVHLSVRV---CLPVCFSCVHLS 1142
Score = 31.1 bits (67), Expect = 0.61
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 334 SPIRSAIYDCLSPAIHISVRAVTSCHHICNRS 239
SP+RS ++ CL +++SVR C +C+R+
Sbjct: 933 SPVRSRVFTCLFACVYLSVRV---CSPVCSRA 961
Score = 31.1 bits (67), Expect = 0.61
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 331 PIRSAIYDCLSPAIHISVRAVTSCHHICNR 242
P S + CLS +H+SVR C H+C+R
Sbjct: 1311 PSVSRVLTCLSACVHLSVRV---CSHVCSR 1337
Score = 30.7 bits (66), Expect = 0.80
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 334 SPIRSAIYDCLSPAIHISVRAVTSCHHICNRSIHRS 227
SP+ S + CLS +H+SVR C +C +H S
Sbjct: 1221 SPVCSRAFTCLSACVHLSVRV---CLPVCFSCVHLS 1253
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 334 SPIRSAIYDCLSPAIHISVRAVTSCHHICNRSIHRS 227
SP+ S ++ CL +H+SVR C +C +H S
Sbjct: 1021 SPVCSRVFTCLFACVHLSVRV---CLPVCFSCVHLS 1053
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 334 SPIRSAIYDCLSPAIHISVRAVTSCHHICNR 242
SP+ S ++ CL H+SVR C +C R
Sbjct: 977 SPVCSRVFTCLFACFHLSVRV---CSPVCTR 1004
>SB_20788| Best HMM Match : IATP (HMM E-Value=4.8)
Length = 336
Score = 31.5 bits (68), Expect = 0.46
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 210 ILWLNQFTLFRHNVFPKTLDEPTLNKEFVKCDDLFSNLSKILYRTDLCGEVWR 52
+ WL + + R N L T +EF+ D LF + + + + LCG +WR
Sbjct: 37 LTWLGEVSSQR-NSLEALLSGETGAREFLHSDKLFESSTSLAFALRLCGLLWR 88
>SB_5300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 383 LLPSNIRIKPQCCVRIVPHSKRNI 312
++P + RI+P CC+RI P + R +
Sbjct: 189 VMPIHCRIEPICCLRIAPSNYRTV 212
>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 303 KQSYIALRMGDNPHTTLRFDSDVGWQQIFVCSGE 404
KQ+Y A++ NP ++FDS G Q+ +G+
Sbjct: 1250 KQAYDAVKSSTNPDKVIKFDSSGGLSQLISDAGK 1283
>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
Length = 1065
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 195 GLTRESAVSLSERCILRLHIWWQDVTARTDICI 293
G+ S +S++ER LH+ WQ D+CI
Sbjct: 375 GVVGPSRLSVTERTPFSLHLSWQPAITYGDLCI 407
>SB_17055| Best HMM Match : DUF149 (HMM E-Value=2.7)
Length = 328
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 63 EVWRRPMSRSGCLWAD 16
E+WR S+ CLWAD
Sbjct: 157 EIWREDCSKLNCLWAD 172
>SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34)
Length = 933
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 404 DYTRAL*AILTIQSNKSNRVETELLIIDGSHSFF*REDIGGLD 532
D+TRA I+T+ NKS+R E + D + S+ + G LD
Sbjct: 201 DHTRAFDGIITLTVNKSSRAEIDRYANDLNQSYPYLANQGRLD 243
>SB_34913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 11 ILSAHRHPLRDIGLLQTSPQRSVLYKIFDRFENRSS 118
+LS +H +D+G S RS++Y +FE RSS
Sbjct: 71 LLSGLQHGCQDMGCQSLSVLRSMMYSGQLKFEKRSS 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,283,933
Number of Sequences: 59808
Number of extensions: 398883
Number of successful extensions: 861
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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