Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0132
         (544 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        28   0.17 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   2.8  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   6.5  

>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 0.17
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 205 ENRQY-RYLSDVYYDCIYGGRMLLPALIYVLLVTSNHILRFEWGTILTQH 351
           ENR + +Y  D+  D    GR +LP L  V      H   F+   +L QH
Sbjct: 499 ENRHFLQYAQDLISDAKVKGRPILPLLKTVQSYKREHYHDFKEADVLPQH 548


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 202  PENRQYRYLSDVYYDCIYGGRMLLP 276
            P+N +  YL  + Y+C+  G+   P
Sbjct: 1100 PDNPEEPYLDGINYNCVAPGKRFQP 1124


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 59  TSPQRSVLYKIFDRFENRSSHFTNSLLRVGSSKVFG 166
           +S +   + K  DR+  + +  TNS ++V  +K+ G
Sbjct: 869 SSTKADAMQKNVDRYTEQINEITNSKVKVLQTKING 904


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,370
Number of Sequences: 2352
Number of extensions: 13558
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50040333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)