Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0132
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.1  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 64  RGLEEAYVPQWMSVG 20
           RG+EEA +PQ+  +G
Sbjct: 199 RGVEEAELPQFTIIG 213


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 106 FKSVKNFI*DGSLWRGLEEAYVPQWMSV 23
           +   KN+  D   WRG+    VP++  V
Sbjct: 63  YDHTKNYPFDVDQWRGMTFVTVPRYKGV 90


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -2

Query: 489 PSMINNSVSTRFDLLLCIVRIAHSALV*SHRNRRRSAAIQHQNQTSMLCEDCPP 328
           P++  +  S +F   L    ++ +A V        S ++QH+  T  L E  PP
Sbjct: 324 PNLDYHDYSRQFPRDLTTQTVSTTADVLQEEEEEYSPSVQHEFVTFDLDEPLPP 377


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 3   FLLFYQPTDIHCG 41
           F L  +PTDI CG
Sbjct: 710 FALVLRPTDIVCG 722



 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 430 NSSQRPGVISPEQTKICC 377
           +S++RP  ISP    I C
Sbjct: 755 HSAKRPSFISPRSQLIIC 772


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,689
Number of Sequences: 438
Number of extensions: 3550
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)