Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0132
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2...    28   3.5  
At5g27520.1 68418.m03293 mitochondrial substrate carrier family ...    28   4.6  
At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ...    28   4.6  
At2g02910.1 68415.m00240 expressed protein contains Pfam profile...    27   6.1  
At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domai...    27   8.1  
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative...    27   8.1  

>At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2.9)
           plant glutamate receptor family, PMID:11379626
          Length = 940

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +2

Query: 14  LSAHRHPLRDIGLLQTSPQRSVLYKIFDRFENRSSHFTNSLLRVGSSKVFGKT 172
           L  HRH L D        +   L+KIFD  +  S  F NS +   SS +  KT
Sbjct: 832 LYEHRHTLGDDSEDSLWRKLKFLFKIFDEKDMNSHTFKNSAIHNISSPMTHKT 884


>At5g27520.1 68418.m03293 mitochondrial substrate carrier family
           protein
          Length = 321

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 211 RQYRYLSDVYYDCIYGGRML 270
           ++YRYLSDV+++ I  G +L
Sbjct: 47  QKYRYLSDVFWEAISSGNVL 66


>At2g13680.1 68415.m01508 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1923

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 374 SNIRIKPQCCVRIVPHSKRNI*LLVTSNTYISAGSNILPPY 252
           +NIR  P+C   I  +    +  L+  N  I  G NI P Y
Sbjct: 340 ANIRFMPECLCYIFHNMAYELHGLLAGNVSIVTGENIKPSY 380


>At2g02910.1 68415.m00240 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 460

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 68  QRSVLYKIFDRFENRSSHFTNSLLRVGSSKVFGKTLCLKRVNWF 199
           +RS ++     + N S H  NS L +   K FG+ + LK  ++F
Sbjct: 5   RRSTVFSSSSSYLNPSGHNDNSFLLLRRGKKFGRIVKLKLSHFF 48


>At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 692

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
 Frame = -2

Query: 264 PATIYAIVVYIAQITILPILWLNQFTLFRHNVFPKTLDEP--TLNKEF-VKCDDLFSNLS 94
           PA +       ++  ++P ++L++ +L +  + P + +     +  E  +  D+LFS +S
Sbjct: 132 PAYVKIAQAVSSRPDLIPPIYLDELSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEIS 191

Query: 93  KILYRTDLCGEVWRRPMSRSGCLWADKIE 7
                    G+V++  + RSG + A K++
Sbjct: 192 PEPVAAASLGQVYQARLRRSGKVVAVKVQ 220


>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
           PABP, putative non-consensus splice donor TA at exon 1;
           similar to polyadenylate-binding protein
           (poly(A)-binding protein) from [Triticum aestivum]
           GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
           thaliana} SP|P42731; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 407

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -2

Query: 180 RHNVFPKTLDEPTLNKEFVKCDDLFSNLSKIL 85
           R NVF K LDE   NK+   C D+FS   K+L
Sbjct: 30  RGNVFVKNLDESIDNKQL--C-DMFSAFGKVL 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,774,266
Number of Sequences: 28952
Number of extensions: 273223
Number of successful extensions: 648
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)