Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0131
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_53209| Best HMM Match : Thyroglobulin_1 (HMM E-Value=9.9e-15)       29   3.6  
SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)          29   4.8  
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            29   4.8  
SB_23258| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/68 (30%), Positives = 27/68 (39%)
 Frame = +2

Query: 221 ECWSYLSLFDSSKSVCKKEKKYIDGELVVSRGCTWKRQDDFEVGCPTSRNEANEVNLFCQ 400
           +C    +  D  K VC      IDG L   RGC    Q      C    N A++  + C 
Sbjct: 32  DCTETPTTCDEGKDVCVTVNGTIDGSLNHFRGCAMNNQCS---DCTQFMN-ASDCKIAC- 86

Query: 401 TCDYDGCN 424
            C+ D CN
Sbjct: 87  -CNTDNCN 93


>SB_53209| Best HMM Match : Thyroglobulin_1 (HMM E-Value=9.9e-15)
          Length = 104

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = +2

Query: 215 RQECWSYLSLFDSSKSVCKKEKKYIDGELVVSRGCTWKRQDDFEVGCPTSRNEANEVNLF 394
           R   W+ +S+       CK +  Y   +  V  G  W+    + V  P+  N+ N  N+ 
Sbjct: 11  RALAWTGISVPGLFVPECKPDGTYEGMQCHVGTGLCWQYDSIYGVFSPSCENDGNYTNIQ 70

Query: 395 CQT 403
           C +
Sbjct: 71  CHS 73


>SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)
          Length = 779

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -1

Query: 329 VSRCNHDSQLIHHQCISFLSCIQTSSCQIRKGSSSILVAVFEAEQI---RIPGVDTDIKR 159
           V  C HD   IH   I  L  +     Q+R+    + V ++ A+     RIPG  T +  
Sbjct: 46  VRLCEHDRNFIHVNLIQILPQLGAIRDQVRRRREKLNVDLWVAQDSLGHRIPGAMTAV-L 104

Query: 158 IVAQRIH 138
           I+A  +H
Sbjct: 105 IIAALLH 111


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
 Frame = -3

Query: 561 TIFIFKVLFETKFNMYGGITNWIYFNKRRLRGASNRAIVL-PMVAAPLHPS*SQV*QKRF 385
           ++ +F +  +   +  GG+T   Y       GASNR  VL  +V A L     +V  K+ 
Sbjct: 366 SVVMFSISPDAPAHSKGGLTAAFYATVTSHMGASNRTKVLNGVVLADLMREKREVLNKQL 425

Query: 384 TSFASFLEVGQP---TSKSSWRFQVQPRLTTNSPSMY 283
                 +        TS S W     PR  T +P  Y
Sbjct: 426 NISIGVIAAWDSKGGTSSSIWDVSSTPRSPTRTPVCY 462


>SB_23258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 611 THHTWNLIGSQIIYKNH 661
           T H W+ IG +I YKNH
Sbjct: 7   TGHAWSSIGIEICYKNH 23


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,158,367
Number of Sequences: 59808
Number of extensions: 363694
Number of successful extensions: 1012
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)