Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0131
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF016686-13|AAB66233.1| 470|Caenorhabditis elegans Hypothetical... 30 1.8
AC024763-6|AAO12403.1| 603|Caenorhabditis elegans Calpain famil... 29 2.4
Z82274-12|CAJ76931.1| 304|Caenorhabditis elegans Hypothetical p... 28 7.4
Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical p... 28 7.4
AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like p... 28 7.4
U40953-2|AAB52647.1| 483|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical... 27 9.8
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri... 27 9.8
AF016657-12|AAB93656.1| 278|Caenorhabditis elegans Hypothetical... 27 9.8
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ... 27 9.8
>U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical
protein F53B3.2 protein.
Length = 634
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 315 PRLTTNSPSMYFFSFLHTDFELSNKER*LQHSCRSFRGG 199
PRL TN P+ + F FL DF+ N +H+ R R G
Sbjct: 539 PRLATNEPNTFDFVFL-DDFKRENYLDDYEHAIRLIRSG 576
>AF016686-13|AAB66233.1| 470|Caenorhabditis elegans Hypothetical
protein R07C3.3 protein.
Length = 470
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 571 YSNIANVISCFEKNSSYLEP 630
YS ++SCF +NSSYL+P
Sbjct: 9 YSAALLILSCFSRNSSYLDP 28
>AC024763-6|AAO12403.1| 603|Caenorhabditis elegans Calpain family
protein 4, isoform b protein.
Length = 603
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 366 LEVGQPTSKSSWRFQVQPRLTTNSPSMYFFSFLHT 262
+E G+ +SK SWR Q QP PS+ FLH+
Sbjct: 566 MEDGEWSSKHSWRLQQQPIYLPQEPSI--LHFLHS 598
>Z82274-12|CAJ76931.1| 304|Caenorhabditis elegans Hypothetical
protein JC8.12b protein.
Length = 304
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 588 VSNVRIVI*TIFIFKVLFETKFNMYGGITNWIY 490
VSNVR V+ T + + +++Y G+ NW +
Sbjct: 243 VSNVRAVVETFLAYYLSVYLFYDVYPGVLNWAF 275
>Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical
protein JC8.12a protein.
Length = 315
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 588 VSNVRIVI*TIFIFKVLFETKFNMYGGITNWIY 490
VSNVR V+ T + + +++Y G+ NW +
Sbjct: 254 VSNVRAVVETFLAYYLSVYLFYDVYPGVLNWAF 286
>AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like
protein protein.
Length = 315
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 588 VSNVRIVI*TIFIFKVLFETKFNMYGGITNWIY 490
VSNVR V+ T + + +++Y G+ NW +
Sbjct: 254 VSNVRAVVETFLAYYLSVYLFYDVYPGVLNWAF 286
>U40953-2|AAB52647.1| 483|Caenorhabditis elegans Hypothetical
protein F53B1.2 protein.
Length = 483
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 142 IRCATILLISVSTPGI-LICSASKTATRMLEL 234
+RC T+L+ S+S PGI L C A T +L
Sbjct: 271 LRCFTMLITSLSVPGIHLQCEARPNTTMQEKL 302
>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
protein Y75B8A.26 protein.
Length = 1144
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 148 CATILLISVSTPGILICSA 204
C ++LIS+STP L+C+A
Sbjct: 710 CMILVLISISTPIFLVCAA 728
>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
protein 2 protein.
Length = 1262
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = -1
Query: 278 FLSCIQTSSCQIRKGSSSILVAVFEAEQIRIPGVDTDIKRIVAQRIHV 135
F + I S IR S++ ++ + +++ G D+ R+V+QR+++
Sbjct: 729 FKAEILRSGTMIRSPSAARFESLLQQRHVQLLGRSVDLNRVVSQRVNM 776
>AF016657-12|AAB93656.1| 278|Caenorhabditis elegans Hypothetical
protein C16C4.11 protein.
Length = 278
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 375 ASFLEVGQPTSKSSWRFQVQPRLTTNSPSMYFFSFLHTDFELSNK 241
+S E G +K+ RF + +L + +F +LH ELSNK
Sbjct: 161 SSIKEGGNYFTKTEKRFNIPWKLNIERKNGFFGLYLHCTKELSNK 205
>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
protein.
Length = 1262
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = -1
Query: 278 FLSCIQTSSCQIRKGSSSILVAVFEAEQIRIPGVDTDIKRIVAQRIHV 135
F + I S IR S++ ++ + +++ G D+ R+V+QR+++
Sbjct: 729 FKAEILRSGTMIRSPSAARFESLLQQRHVQLLGRSVDLNRVVSQRVNM 776
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,444,946
Number of Sequences: 27780
Number of extensions: 279173
Number of successful extensions: 783
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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