Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0130
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    29   0.46 
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   7.5  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   7.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   7.5  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    25   9.9  

>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 85  YHKIWKFYQKYQNSHW 132
           YH+IW+FY+K + S W
Sbjct: 83  YHEIWQFYKKAEASFW 98


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 650 CYQRFVYDPPRNLLFN 603
           C+QR  YD PR+L FN
Sbjct: 461 CFQRPHYDDPRDLEFN 476


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 577 IFTRWRLMRHCYHVQNDPCLALSI-DSQVTYRSWLTSYAYKAIIHLINIQSTNCALLKFV 401
           I+    +M H  H   DP +A  I +  + +   + +Y YK + +LI I     A   F 
Sbjct: 476 IYIASAMMEH--HCSRDPVIASRIFELGMRHFGDVPAYVYKYLSYLIAINDETNARALFE 533

Query: 400 KAI 392
           KAI
Sbjct: 534 KAI 536


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 649 VTNASYMTLPEIYCLIHTKINEKLIFT 569
           +TN  Y+  P +   +H + N K I+T
Sbjct: 70  LTNLPYLNEPSVLHALHNRYNNKQIYT 96


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 70  SAARYYHKIWKFYQKYQNSH 129
           ++ +YYH  W+F Q Y + H
Sbjct: 151 NSGKYYHN-WQFVQNYDDPH 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,402
Number of Sequences: 5004
Number of extensions: 55362
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)