Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0130
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53100.1 68414.m06013 glycosyltransferase family 14 protein /...    28   4.9  
At5g64800.1 68418.m08148 CLE21, putative CLAVATA3/ESR-Related 21...    28   6.5  
At3g06580.1 68416.m00764 galactokinase (GAL1) identical to galac...    28   6.5  

>At1g53100.1 68414.m06013 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile: PF02485 Core-2/I-Branching enzyme
          Length = 406

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 565 WRLMRHCYHVQNDPCLALSIDSQVTYRSWLTS 470
           WR +R  YH +N   + L ++S V  RS L S
Sbjct: 79  WRTLRALYHPRNQYIVHLDLESPVDERSELAS 110


>At5g64800.1 68418.m08148 CLE21, putative CLAVATA3/ESR-Related 21
           (CLE21)
          Length = 106

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -1

Query: 306 ASKTGVLISVIYTLAL*IVVTRNESIQ 226
           A K  VLI VI+T+ + I+++R+ SIQ
Sbjct: 9   AMKRDVLIIVIFTVLVLIIISRSSSIQ 35


>At3g06580.1 68416.m00764 galactokinase (GAL1) identical to
           galactokinase (Galactose kinase) [Arabidopsis thaliana]
           SWISS-PROT:Q9SEE5
          Length = 496

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 295 RCFDKRHLHTGSINSRYTK*IYTTTPDFVLD 203
           +C D++ L   ++N +YT   Y   PD  +D
Sbjct: 86  KCEDQKQLRIANVNDKYTMCTYPADPDQEID 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,700,645
Number of Sequences: 28952
Number of extensions: 268567
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)