Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0129
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.2  
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc...    25   7.4  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.8  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    25   9.8  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 532 KQKLRLLLIPGERLIQFASENLVTEI--LIHPQMNTL 428
           ++ +  L   G R+I FAS+NL+T +  LIH   +TL
Sbjct: 638 QEVIHTLSSKGFRIIAFASKNLITPLQELIHLSRSTL 674


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 423 SACGTCSARSRGTGTSCTLDTPSPETAPGSCK*VDATPS 307
           S  G+ S+    T TSCT  T  P T   S      TP+
Sbjct: 99  STTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPT 137


>SPAC926.05c |||diphthamide biosynthesis protein Dph4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 196 LVHPSKQKKKPSTIY 240
           L HP K K+KPS +Y
Sbjct: 30  LFHPDKCKEKPSVVY 44


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 191 VSSFTHLSKKKNPQLYTESIHTW 259
           V +F      K P +YT   HTW
Sbjct: 86  VEAFEKWEFSKEPTVYTHGTHTW 108


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 412 NLLSSFTRHRHLVHAGYT 359
           NL + FTRHRH ++  Y+
Sbjct: 145 NLGTGFTRHRHRIYDEYS 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,872
Number of Sequences: 5004
Number of extensions: 45109
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)