Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0129
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.47 
SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_20224| Best HMM Match : ABC_tran (HMM E-Value=2.2e-36)              28   5.8  
SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)         27   7.7  

>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 127 WVAHLRCRCPWAPVTT*HQVSCELVHPSKQKKKPS 231
           W+ H  CR PW  +    ++S + V PS   + PS
Sbjct: 17  WIVHCTCREPWGRIKRKEKLSSKRVWPSPNPRNPS 51


>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 426 CSACGTCSARSRGTGTSCTLDTPSPETAPGSC 331
           C  C      ++ T T C+ D P+PE  PG C
Sbjct: 236 CFQCRCIKGFAQCTRTECSRDCPNPEPIPGQC 267


>SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 448 HPQMNTLMQCMRNLLSSFTRHRHLVHAGYTFAGNGSWIMQVS 323
           H +M + ++ +  L    TR   L  AGY+  G   W+M++S
Sbjct: 501 HKEMTSFLKKVHELYPHITR---LYSAGYSVKGRELWVMEIS 539


>SB_20224| Best HMM Match : ABC_tran (HMM E-Value=2.2e-36)
          Length = 380

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = +3

Query: 363 YPACTRCLCLVNE-LSRFRM---HCISVFICGWIRISVTRFSEANWISLSPGISKSLS-F 527
           Y   T C+C++ E + +F +   +CIS+    W+ +S+T  +    +S    + +S++ +
Sbjct: 22  YVRQTSCICVILEQMYKFSLIFSNCISLVTMVWVGVSLTPVNVFTILSFYVSLRQSVTYY 81

Query: 528 CFEAI 542
           C  AI
Sbjct: 82  CLLAI 86


>SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)
          Length = 288

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 372 TLDTPSPETAPGSCK*VDATPSYVN 298
           T   P P  APGSCK V+A     N
Sbjct: 242 TTQAPPPTAAPGSCKAVNAWAGQAN 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,585,541
Number of Sequences: 59808
Number of extensions: 369421
Number of successful extensions: 882
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)