Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0129
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83228-3|CAB60998.1| 536|Caenorhabditis elegans Hypothetical pr... 28 3.9
AF145377-1|AAD39816.1| 536|Caenorhabditis elegans MOM-4 protein. 28 3.9
AF143242-1|AAD37359.1| 536|Caenorhabditis elegans protein kinas... 28 3.9
Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical p... 28 5.1
Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical p... 28 5.1
Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical pr... 28 5.1
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein. 28 5.1
U29614-6|AAA68809.2| 378|Caenorhabditis elegans Hypothetical pr... 27 9.0
AL132862-32|CAJ76955.1| 135|Caenorhabditis elegans Hypothetical... 27 9.0
AL132862-31|CAB70234.1| 485|Caenorhabditis elegans Hypothetical... 27 9.0
>Z83228-3|CAB60998.1| 536|Caenorhabditis elegans Hypothetical
protein F52F12.3 protein.
Length = 536
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 298 CWNSNADVRYNRQPCMNTFCI 236
CWN NAD+R C+ F +
Sbjct: 285 CWNDNADIRPTSSECVEYFTL 305
>AF145377-1|AAD39816.1| 536|Caenorhabditis elegans MOM-4 protein.
Length = 536
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 298 CWNSNADVRYNRQPCMNTFCI 236
CWN NAD+R C+ F +
Sbjct: 285 CWNDNADIRPTSSECVEYFTL 305
>AF143242-1|AAD37359.1| 536|Caenorhabditis elegans protein kinase
MOM-4 protein.
Length = 536
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 298 CWNSNADVRYNRQPCMNTFCI 236
CWN NAD+R C+ F +
Sbjct: 285 CWNDNADIRPTSSECVEYFTL 305
>Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical
protein ZK1098.10d protein.
Length = 1185
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 371 RWIHLRRKRLLDHASELTQHHLMLMLEFER 282
R + L+ K DHAS L + + LEF+R
Sbjct: 146 RMLELKAKNATDHASRLEEREVEQKLEFDR 175
>Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical
protein ZK1098.10b protein.
Length = 1157
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 371 RWIHLRRKRLLDHASELTQHHLMLMLEFER 282
R + L+ K DHAS L + + LEF+R
Sbjct: 146 RMLELKAKNATDHASRLEEREVEQKLEFDR 175
>Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical
protein ZK1098.10a protein.
Length = 1139
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 371 RWIHLRRKRLLDHASELTQHHLMLMLEFER 282
R + L+ K DHAS L + + LEF+R
Sbjct: 110 RMLELKAKNATDHASRLEEREVEQKLEFDR 139
>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
protein C27F2.8 protein.
Length = 1715
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -1
Query: 529 QKLRLLLIP-GERLIQFASENLVTEILIHPQMN-TLMQCMRN 410
Q + L++ P E L++ NLV+E+ H +MN TLM +R+
Sbjct: 775 QVIPLVIYPDAESLVELMRPNLVSELTDHVEMNETLMFSLRD 816
>AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein.
Length = 1157
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 371 RWIHLRRKRLLDHASELTQHHLMLMLEFER 282
R + L+ K DHAS L + + LEF+R
Sbjct: 146 RMLELKAKNATDHASRLEEREVEQKLEFDR 175
>U29614-6|AAA68809.2| 378|Caenorhabditis elegans Hypothetical
protein F18E9.3 protein.
Length = 378
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 54 VRTGRYHRPVYNCR 95
+ TGRY P YNCR
Sbjct: 302 IHTGRYSGPTYNCR 315
>AL132862-32|CAJ76955.1| 135|Caenorhabditis elegans Hypothetical
protein Y73F8A.34b protein.
Length = 135
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3
Query: 371 RWIHLRRKRLLDHASE 324
R++ LRRK++LDH +E
Sbjct: 109 RYVELRRKKMLDHCAE 124
>AL132862-31|CAB70234.1| 485|Caenorhabditis elegans Hypothetical
protein Y73F8A.34a protein.
Length = 485
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3
Query: 371 RWIHLRRKRLLDHASE 324
R++ LRRK++LDH +E
Sbjct: 459 RYVELRRKKMLDHCAE 474
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,671,967
Number of Sequences: 27780
Number of extensions: 265777
Number of successful extensions: 707
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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