Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0129
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    26   0.29 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.3  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +2

Query: 209 LSKKKNPQLYTESIHTWLTV---VSDVRVRIPALT 304
           ++K+ N ++YT S+++ LTV   V+ V + IP  T
Sbjct: 522 VNKRNNAKIYTSSVNSNLTVNQTVNPVAINIPGDT 556


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 381 TSCTLDTPSPETAPGSCK 328
           T CT+    P+   G+CK
Sbjct: 230 TGCTITRVIPQVCSGNCK 247


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 381 TSCTLDTPSPETAPGSCK 328
           T CT+    P+   G+CK
Sbjct: 230 TGCTITRVIPQVCSGNCK 247


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -1

Query: 445 PQMNTLMQCMRNLLSSFTRHRHLVHAGYT 359
           P+   +++  R++L  F + +H++   YT
Sbjct: 261 PETYNVVRKFRDVLDEFPQPKHMLIEAYT 289


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -1

Query: 445 PQMNTLMQCMRNLLSSFTRHRHLVHAGYT 359
           P+   +++  R++L  F + +H++   YT
Sbjct: 261 PETYNVVRKFRDVLDEFPQPKHMLIEAYT 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,278
Number of Sequences: 438
Number of extensions: 3605
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)