Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0128
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 38 0.002
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 29 0.68
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 28 1.6
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 28 1.6
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 26 4.8
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha... 26 6.4
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 6.4
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 8.4
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 8.4
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 25 8.4
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3
Query: 267 DKTYAFSPSPGHDNTLLITGLSGHGFKFASVLGE 166
D + F P ++N + TG SGHGFKF +LG+
Sbjct: 336 DAEFVFDYHPDYENLFVCTGGSGHGFKFFPILGK 369
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 29.1 bits (62), Expect = 0.68
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 267 DKTYAFSPSPGHDNTLLITGLSGHGFKFASVLGEIAA 157
D + P DN + G SGH FKF +G A
Sbjct: 351 DANFLIDKVPQFDNVFVANGDSGHAFKFLPNIGRYIA 387
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 602 RLCQ*MIRYQPINCDDYDNLELACQHHLMLTLS 504
RLC M RY N D+Y+N E + H L ++
Sbjct: 976 RLCISMQRYAKFNRDEYENAEFLLRAHPELQIA 1008
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 243 SPGHDNTLLITGLSGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLS 103
S G+DN+L+I + + FKF L E+ +D D DL RLS
Sbjct: 2 SNGNDNSLIIKNIGNNEFKFVETLHEL---LPEDITYD-DLGSLRLS 44
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 449 MWSIWSSRPLAKPVSYVWIKLPAL 378
+WS W P A+ ++W+ +P L
Sbjct: 214 IWSAWRKLPDAEAWHHIWVMVPEL 237
>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
Isp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 131 SLFLSCAKSAAISPKTDANLKPCPLRPVMSSVLSWPGEGENA 256
+LF S A +A + P TD+++ +RP + + + GE A
Sbjct: 16 ALFASTACAAPVMPATDSDIAHAGIRPELDNAF-YDSHGEAA 56
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -3
Query: 270 PDKTYAFSPSPGHDNTLLITGLSGHGFKFASVLGEIAA 157
PD ++ GH+N+++ +S +G FA+ G++ A
Sbjct: 541 PDSPHSQLTLQGHNNSVISVAVSPNGHCFATGSGDLRA 578
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 85 ITASRMRPFLQEYLMRRLLHYLIN 14
IT +PF +E L++ LL YL+N
Sbjct: 2312 ITHYLSKPFKKETLIKMLLQYLVN 2335
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 186 FASVLGEIAADFAQDKKSDFDLTPF 112
+ VL + D A DKK++ D+ PF
Sbjct: 138 YERVLSNASVDSALDKKAEVDIIPF 162
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 442 LHIFAGD*IAGFCLQFFAIFQLSVSIK 522
L IFAG+ I G+CL+ F L + ++
Sbjct: 5 LRIFAGNGIGGWCLRLFLFGSLILLLR 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,346
Number of Sequences: 5004
Number of extensions: 58922
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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