Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0128
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0044 - 11927272-11928516                                         39   0.004
12_02_0680 + 21903520-21904093,21904474-21905162                       33   0.31 
09_04_0617 - 18981258-18981949,18983869-18984427                       33   0.31 

>01_03_0044 - 11927272-11928516
          Length = 414

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = -3

Query: 270 PDKTYAFSPSPGH--DNTLLITGLSGHGFKFASVLGEIAADFAQD------KKSDFDLTP 115
           PDK +      G   D+ ++  G SGHGFK    +G I A+ A D       ++  +L  
Sbjct: 342 PDKDFVIDFLGGEFGDDVVVGAGFSGHGFKMGPAVGRILAEMAMDGEARTAAEAGVELRH 401

Query: 114 FRLSRFQ 94
           FR+SRF+
Sbjct: 402 FRISRFE 408


>12_02_0680 + 21903520-21904093,21904474-21905162
          Length = 420

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = -3

Query: 210 GLSGHGFKFASVLGEIAADFAQD------KKSDFDLTPFRLSRFQ 94
           G SGHGFK    +G I A+ A D       ++  +L  FR+ RF+
Sbjct: 362 GFSGHGFKMGPAVGRILAEMAMDGEAKTAAEAGVELGYFRIGRFE 406


>09_04_0617 - 18981258-18981949,18983869-18984427
          Length = 416

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = -3

Query: 210 GLSGHGFKFASVLGEIAADFAQD------KKSDFDLTPFRLSRFQ 94
           G SGHGFK    +G I A+ A D       ++  +L  FR+ RF+
Sbjct: 358 GFSGHGFKMGPAVGRILAEMALDGEARTAAEAGVELRHFRIGRFE 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,267,752
Number of Sequences: 37544
Number of extensions: 412730
Number of successful extensions: 928
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)