Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0128
         (731 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-396|AAF47598.1| 2517|Drosophila melanogaster CG11814-PA...    30   2.8  
Z28622-1|CAA82262.1| 1293|Drosophila melanogaster xeroderma pigm...    29   8.6  
X95178-1|CAA64485.1|  693|Drosophila melanogaster caupolican hom...    29   8.6  
BT021246-1|AAX33394.1|  693|Drosophila melanogaster RE64213p pro...    29   8.6  
BT015986-1|AAV36871.1|  693|Drosophila melanogaster RE59515p pro...    29   8.6  
AY070566-1|AAL48037.1| 1293|Drosophila melanogaster LD47533p pro...    29   8.6  
AF209743-1|AAF24766.1| 1293|Drosophila melanogaster XPC-like pro...    29   8.6  
AE014296-2165|AAF49895.1|  693|Drosophila melanogaster CG10605-P...    29   8.6  
AE013599-2037|AAF58150.1| 1293|Drosophila melanogaster CG8153-PA...    29   8.6  
AE013599-2036|AAM68530.1| 1294|Drosophila melanogaster CG8153-PC...    29   8.6  

>AE014296-396|AAF47598.1| 2517|Drosophila melanogaster CG11814-PA
            protein.
          Length = 2517

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = -1

Query: 434  SSRPLAKPVSYVWIKLPALATRKSVRW--W*ASPD*LSPDATFDASYPAFT*LSVFCQTK 261
            S  P +KP+ Y  +  P ++T + +RW  +  SP   +P        P    L  FC T 
Sbjct: 2058 SPHPASKPLDYSLVGKPIVSTVRGLRWGVYVGSPQLKAPSWANIHKIPGTEHLVSFCNTN 2117

Query: 260  LTHSHLHPATIIHCSLP 210
            + ++    A+++  + P
Sbjct: 2118 VVYALPGRASVMQGAEP 2134


>Z28622-1|CAA82262.1| 1293|Drosophila melanogaster xeroderma
           pigmentosum group Ccomplementing factor protein.
          Length = 1293

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +2

Query: 134 LFLSCAKSAAISPKTDANLKPCPLRPVMSSVLS---WPGEGENA*VLSGRKRLVK*KPDK 304
           +F++ A+   +  +   NL+P PLRP  S ++     P +   +  +   +     KP K
Sbjct: 485 IFIALARGMGMHCRLIVNLQPMPLRPAASDLIPIKLRPDDKNKSQTVESERESEDEKPKK 544

Query: 305 THQTSHPAKVNQDSLT 352
             +   PA+      T
Sbjct: 545 DKKAGKPAEKESSKST 560


>X95178-1|CAA64485.1|  693|Drosophila melanogaster caupolican
           homeoprotein protein.
          Length = 693

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 332 LSPDATFDASYPAFT*LSVFCQTKLTHSHLHPATIIH 222
           L+P AT   ++P     S + Q+  TH+H HP  + H
Sbjct: 367 LAPYATPPGAHPMHAAYSSYAQSHNTHTHPHPQQMQH 403


>BT021246-1|AAX33394.1|  693|Drosophila melanogaster RE64213p
           protein.
          Length = 693

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 332 LSPDATFDASYPAFT*LSVFCQTKLTHSHLHPATIIH 222
           L+P AT   ++P     S + Q+  TH+H HP  + H
Sbjct: 367 LAPYATPPGAHPMHAAYSSYAQSHNTHTHPHPQQMQH 403


>BT015986-1|AAV36871.1|  693|Drosophila melanogaster RE59515p
           protein.
          Length = 693

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 332 LSPDATFDASYPAFT*LSVFCQTKLTHSHLHPATIIH 222
           L+P AT   ++P     S + Q+  TH+H HP  + H
Sbjct: 367 LAPYATPPGAHPMHAAYSSYAQSHNTHTHPHPQQMQH 403


>AY070566-1|AAL48037.1| 1293|Drosophila melanogaster LD47533p
           protein.
          Length = 1293

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +2

Query: 134 LFLSCAKSAAISPKTDANLKPCPLRPVMSSVLS---WPGEGENA*VLSGRKRLVK*KPDK 304
           +F++ A+   +  +   NL+P PLRP  S ++     P +   +  +   +     KP K
Sbjct: 485 IFIALARGMGMHCRLIVNLQPMPLRPAASDLIPIKLRPDDKNKSQTVESERESEDEKPKK 544

Query: 305 THQTSHPAKVNQDSLT 352
             +   PA+      T
Sbjct: 545 DKKAGKPAEKESSKST 560


>AF209743-1|AAF24766.1| 1293|Drosophila melanogaster XPC-like
           protein isoform a protein.
          Length = 1293

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +2

Query: 134 LFLSCAKSAAISPKTDANLKPCPLRPVMSSVLS---WPGEGENA*VLSGRKRLVK*KPDK 304
           +F++ A+   +  +   NL+P PLRP  S ++     P +   +  +   +     KP K
Sbjct: 485 IFIALARGMGMHCRLIVNLQPMPLRPAASDLIPIKLRPDDKNKSQTVESERESEDEKPKK 544

Query: 305 THQTSHPAKVNQDSLT 352
             +   PA+      T
Sbjct: 545 DKKAGKPAEKESSKST 560


>AE014296-2165|AAF49895.1|  693|Drosophila melanogaster CG10605-PA
           protein.
          Length = 693

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 332 LSPDATFDASYPAFT*LSVFCQTKLTHSHLHPATIIH 222
           L+P AT   ++P     S + Q+  TH+H HP  + H
Sbjct: 367 LAPYATPPGAHPMHAAYSSYAQSHNTHTHPHPQQMQH 403


>AE013599-2037|AAF58150.1| 1293|Drosophila melanogaster CG8153-PA,
           isoform A protein.
          Length = 1293

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +2

Query: 134 LFLSCAKSAAISPKTDANLKPCPLRPVMSSVLS---WPGEGENA*VLSGRKRLVK*KPDK 304
           +F++ A+   +  +   NL+P PLRP  S ++     P +   +  +   +     KP K
Sbjct: 485 IFIALARGMGMHCRLIVNLQPMPLRPAASDLIPIKLRPDDKNKSQTVESERESEDEKPKK 544

Query: 305 THQTSHPAKVNQDSLT 352
             +   PA+      T
Sbjct: 545 DKKAGKPAEKESSKST 560


>AE013599-2036|AAM68530.1| 1294|Drosophila melanogaster CG8153-PC,
           isoform C protein.
          Length = 1294

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +2

Query: 134 LFLSCAKSAAISPKTDANLKPCPLRPVMSSVLS---WPGEGENA*VLSGRKRLVK*KPDK 304
           +F++ A+   +  +   NL+P PLRP  S ++     P +   +  +   +     KP K
Sbjct: 486 IFIALARGMGMHCRLIVNLQPMPLRPAASDLIPIKLRPDDKNKSQTVESERESEDEKPKK 545

Query: 305 THQTSHPAKVNQDSLT 352
             +   PA+      T
Sbjct: 546 DKKAGKPAEKESSKST 561


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,340,582
Number of Sequences: 53049
Number of extensions: 681017
Number of successful extensions: 1633
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)