Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0128
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23529-5|AAL32212.2|  385|Caenorhabditis elegans Hypothetical pr...    40   0.001
U23529-6|AAL32208.1|  384|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z68751-2|CAA92972.2|  193|Caenorhabditis elegans Hypothetical pr...    30   1.9  

>U23529-5|AAL32212.2|  385|Caenorhabditis elegans Hypothetical
           protein C15B12.8 protein.
          Length = 385

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 270 PDKTYAFSPSPGHDNTLLITGL-SGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLSRFQ 94
           PD  Y   P    ++ +L+ G  SG GFK A  +G   A+ A  K +  D+T F  SRF+
Sbjct: 323 PDHHYLIGPVSSENSKILVGGCGSGSGFKTAPGIGRSLAEMAAGKSTTVDVTFFSPSRFE 382


>U23529-6|AAL32208.1|  384|Caenorhabditis elegans Hypothetical
           protein C15B12.1 protein.
          Length = 384

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 270 PDKTYAFSPSPGHDNTLLITGL-SGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLSRFQ 94
           PD  Y     P  +  +L+ G  SG GFK A  +G+  A+ A  KK+  D++ F  +RF+
Sbjct: 321 PDDHYIIGTIPTKNPNILVGGCGSGSGFKVAPGIGKALAEMAAGKKTTVDVSFFSANRFK 380

Query: 93  *SSL 82
            S +
Sbjct: 381 PSKI 384


>Z68751-2|CAA92972.2|  193|Caenorhabditis elegans Hypothetical
           protein T05E11.2 protein.
          Length = 193

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 104 ESLNGVKSKSLFLSC--AKSAAISPKTDANLKPCPLRPVMSS 223
           ++L GVK   LF  C   KS  +S   D+N K C LR  ++S
Sbjct: 11  DNLGGVKDYGLFRFCYTPKSQPLSRDDDSNSKTCHLRNYINS 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,764,117
Number of Sequences: 27780
Number of extensions: 336772
Number of successful extensions: 723
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)