Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0128
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24580.1 68415.m02935 sarcosine oxidase family protein simila...    35   0.064
At2g42760.1 68415.m05295 expressed protein                             30   1.4  
At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial...    28   5.6  
At1g33290.2 68414.m04118 sporulation protein-related isoform con...    27   9.7  
At1g33290.1 68414.m04117 sporulation protein-related isoform con...    27   9.7  

>At2g24580.1 68415.m02935 sarcosine oxidase family protein similar
           to peroxisomal sarcosine oxidase from Homo sapiens
           [SP|Q9P0Z9], Oryctolagus cuniculus [SP|P79371], Mus
           musculus [SP|Q9D826]
          Length = 416

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -3

Query: 210 GLSGHGFKFASVLGEIAADFAQDKKS---DFDLTPFRLSRFQ 94
           G SGHGFK A  +G I AD A + ++     ++  F L RF+
Sbjct: 353 GFSGHGFKMAPAVGRILADMAMEVEAGGGGVEMKQFSLRRFE 394


>At2g42760.1 68415.m05295 expressed protein 
          Length = 267

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = +2

Query: 104 ESLNGVKSK-SLFLSCAKSAAISPKTDANLKPCPLRPVMSSVLSWPGEGENA*VLSGRKR 280
           E++    SK SLF S +    +SP++   +KP P++  + ++LS  G+  NA  ++ R+R
Sbjct: 66  ETMMTTSSKTSLFSSSSDDLFLSPRSVLPVKPTPMK--LQTILS--GKEVNAFTIAERER 121

Query: 281 LVK*KPDKTHQTSHPAKV 334
           L+  K ++  +    + V
Sbjct: 122 LLSEKEEQRKKKKKKSNV 139


>At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial,
           putative / H(+)-transporting two-sector ATPase, delta
           (OSCP) subunit, putative identical to SP|Q96251; similar
           to SP|P22778 ATP synthase delta chain, mitochondrial
           precursor (EC 3.6.3.14) (Oligomycin sensitivity
           conferral protein) (OSCP) {Ipomoea batatas}; contains
           Pfam profile PF00213: ATP synthase F1, delta subunit
          Length = 238

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 104 ESLNGVKSKSLFLSCAKSAAISPKTDANLK-PCPLRPVMSSVLSW 235
           +S++ V+SKSLF +    A  S +T AN+K P  L     +  SW
Sbjct: 19  DSVSSVRSKSLFPALRTYATASAQTTANVKVPIALVGENGNFASW 63


>At1g33290.2 68414.m04118 sporulation protein-related isoform
           contains non-consensus AT-donor acceptor site at intron
           6; similar to Stage III sporulation protein AA.
           (Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
           SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
           stage III sporulation protein AA (GI:18145497)
           [Clostridium perfringens str. 13]
          Length = 303

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 187 ICVSFRGNSCRFCARQKKRF*FD---AIQAFPLPIIIITASRMRPFLQEYLMRRLLHYLI 17
           +CV + G +CR  +  ++RF      A  A P    +I    +  FL E L + L H L+
Sbjct: 4   VCVPWGGGACRLISPIRRRFPVSSSVASLALPDSSSMIVDDNLGAFL-EILPKDLRHRLL 62

Query: 16  NNIR 5
           N+ R
Sbjct: 63  NDSR 66


>At1g33290.1 68414.m04117 sporulation protein-related isoform
           contains non-consensus AT-donor acceptor site at intron
           6; similar to Stage III sporulation protein AA.
           (Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
           SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
           stage III sporulation protein AA (GI:18145497)
           [Clostridium perfringens str. 13]
          Length = 379

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 187 ICVSFRGNSCRFCARQKKRF*FD---AIQAFPLPIIIITASRMRPFLQEYLMRRLLHYLI 17
           +CV + G +CR  +  ++RF      A  A P    +I    +  FL E L + L H L+
Sbjct: 4   VCVPWGGGACRLISPIRRRFPVSSSVASLALPDSSSMIVDDNLGAFL-EILPKDLRHRLL 62

Query: 16  NNIR 5
           N+ R
Sbjct: 63  NDSR 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,892,592
Number of Sequences: 28952
Number of extensions: 320011
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)