Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0127
         (767 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin...   211   2e-53
UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protei...   137   3e-31
UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5; ...    34   3.4  
UniRef50_Q6R3F5 Cluster: Hyaluronidase; n=1; Mycoplasma alligato...    34   4.5  
UniRef50_Q6BHX1 Cluster: Similar to CA3900|IPF10092 Candida albi...    34   4.5  
UniRef50_Q19319 Cluster: Cadherin-4 precursor; n=1; Caenorhabdit...    34   4.5  
UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2; ...    33   5.9  
UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  
UniRef50_A0VF82 Cluster: Putative uncharacterized protein precur...    33   7.8  
UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, who...    33   7.8  

>UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin -
           Spodoptera littoralis nuclear polyhedrosis virus (SlNPV)
          Length = 249

 Score =  211 bits (515), Expect = 2e-53
 Identities = 93/148 (62%), Positives = 115/148 (77%)
 Frame = +1

Query: 208 GQKPKTYPF*RNSQCEPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVAN 387
           G+  K   F      +PDTMKLIVNW+GKEFLRETWTRF+EDSFPIVNDQEVMDV+LV N
Sbjct: 68  GKNQKLTLFKEIRNVKPDTMKLIVNWNGKEFLRETWTRFMEDSFPIVNDQEVMDVFLVVN 127

Query: 388 LKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMTTNTELVWLKRAAACPIMNI 567
           ++PTRPNRC++FLAQHALR + +YVPH+VIRIVEPSYVG      +   K+   CP+MN+
Sbjct: 128 MRPTRPNRCFRFLAQHALRCDPEYVPHDVIRIVEPSYVGTNNEYRISLAKKGGGCPVMNL 187

Query: 568 HSEYTNSFESFVNRVIWEELLQTPSVYI 651
           H+EYT SFESF+++VIW    + P VY+
Sbjct: 188 HAEYTTSFESFIDKVIWYNFYK-PIVYV 214



 Score =  124 bits (300), Expect = 2e-27
 Identities = 54/77 (70%), Positives = 66/77 (85%)
 Frame = +2

Query: 29  YSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGP 208
           Y+Y+P +G+TYVYDNKYYKNLG +IKNAKRK   +E E +E++ D LD Y+VAEDPF+GP
Sbjct: 8   YNYSPHLGKTYVYDNKYYKNLGHVIKNAKRKHDALEREADERELDHLDKYLVAEDPFMGP 67

Query: 209 GKNQKLTLFKEIRSVNP 259
           GKNQKLTLFKEIR+V P
Sbjct: 68  GKNQKLTLFKEIRNVKP 84


>UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protein;
           n=4; Nucleopolyhedrovirus|Rep: Polyhedrin, major
           occlusion body protein - Neodiprion lecontii NPV
          Length = 247

 Score =  137 bits (331), Expect = 3e-31
 Identities = 67/149 (44%), Positives = 90/149 (60%), Gaps = 1/149 (0%)
 Frame = +1

Query: 208 GQKPKTYPF*RNSQCEPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVAN 387
           G+  K   F      + +TMKL +NWSG+E+LRE WT F+ED+FPI N QE  DV+L   
Sbjct: 66  GKHVKMVMFQEVRNIKANTMKLAINWSGREYLREVWTTFIEDTFPINNYQEFTDVFLEIR 125

Query: 388 LKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMTTNTELVWLKRAAACPIMNI 567
             P + NR Y+FLAQH LR +ED+VP + IR++EP Y+   T   L  LKR   CP+M I
Sbjct: 126 CTPNKSNRHYRFLAQHGLRMDEDFVPCDTIRVIEPEYLQGNT-VSLSLLKRDGGCPMMKI 184

Query: 568 HSEYTN-SFESFVNRVIWEELLQTPSVYI 651
             ++     E FV+R++W      P VYI
Sbjct: 185 RQQFNELDLEQFVDRILWCH-FHRPIVYI 212



 Score = 69.7 bits (163), Expect = 7e-11
 Identities = 27/70 (38%), Positives = 50/70 (71%)
 Frame = +2

Query: 44  TIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQK 223
           T  ++Y+YDNKYY+ LG +I +AK++KH  + E+  ++   L+ +++  DP  GPGK+ K
Sbjct: 11  TSAKSYIYDNKYYRGLGDIINSAKKRKHDQDWEKHAEERRALNGFILPLDPRTGPGKHVK 70

Query: 224 LTLFKEIRSV 253
           + +F+E+R++
Sbjct: 71  MVMFQEVRNI 80


>UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 468

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 289 GKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKP--TRPNRCYKFLAQHALRWEEDY 459
           G EFL   +T FV+ ++  +N++   D+Y  A ++    +   C  F A     ++E+Y
Sbjct: 103 GIEFLTNIFTEFVKSTYKEINEENFYDIYDCATIQNDINKVEECISFFASKMNDFQEEY 161


>UniRef50_Q6R3F5 Cluster: Hyaluronidase; n=1; Mycoplasma
           alligatoris|Rep: Hyaluronidase - Mycoplasma alligatoris
          Length = 1438

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 433 HALRWEEDYVPHEVIRIVEPSYVGMTTNTELVW 531
           H  +W E Y P E+ +I E S+VG  + T  VW
Sbjct: 229 HGQKWYELYPPEELEKIKEMSHVGNMSKTRFVW 261


>UniRef50_Q6BHX1 Cluster: Similar to CA3900|IPF10092 Candida
           albicans IPF10092 Asparagine-rich protein; n=1;
           Debaryomyces hansenii|Rep: Similar to CA3900|IPF10092
           Candida albicans IPF10092 Asparagine-rich protein -
           Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 791

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 471 SNQNCGAILRGHDNEYRISLAKKGGGLPNHEHPQRVHQLVRVVCEPRHMGGTSTNPIGLH 650
           SNQN  A LRG +N     LA++   L  H+H Q   Q  +   +P++      +P G++
Sbjct: 671 SNQNTNANLRGTNNTPPQLLAQQLAMLQQHQHQQHQQQNQKQASQPKYSQSVLNSP-GMY 729

Query: 651 S 653
           S
Sbjct: 730 S 730


>UniRef50_Q19319 Cluster: Cadherin-4 precursor; n=1; Caenorhabditis
            elegans|Rep: Cadherin-4 precursor - Caenorhabditis
            elegans
          Length = 4307

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -3

Query: 483  NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 307
            NS YFVGH  F F  +S   ++++A V A   + G+   V + +V  N E++      S 
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537

Query: 306  TQKLFAAPVDD*LHGIGFTLRI 241
              +L A P+D  L  +   LRI
Sbjct: 1538 EVRL-AKPLDPELQHVESILRI 1558


>UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 623

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 275 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKK 454
           SST +  S  +      + T++P  T K   T TS+PTS   + T A  ++ +       
Sbjct: 162 SSTASVSSTILSSTATTMVTSTPT-TEKSSTTTTSTPTSEATSTTTAMITTTSGTTENPT 220

Query: 455 TT-CPTK*SELWSHPT 499
           TT CPTK      HPT
Sbjct: 221 TTDCPTKVCRYGFHPT 236


>UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus niger|Rep: Putative uncharacterized protein
           - Aspergillus niger
          Length = 329

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +2

Query: 275 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSP-TSNPHAPTGATSSSLNTLL 442
           S++ + ++  ++L P++L  ASP  +T   +T T+SP TS P   + ATS  L  +L
Sbjct: 39  SNSSSPRTMHIRLPPLMLPGASPRLSTLEPFTTTTSPSTSFPSPSSSATSDPLADIL 95


>UniRef50_A0VF82 Cluster: Putative uncharacterized protein precursor;
            n=1; Delftia acidovorans SPH-1|Rep: Putative
            uncharacterized protein precursor - Delftia acidovorans
            SPH-1
          Length = 1748

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 504  HDNEYRISLAKKGG-GLPNHEHPQRVHQLVRVVCEPRHMGG 623
            HD   R  L  +GG G P HEH  R    VR V   +H GG
Sbjct: 1677 HDLHARADLGHRGGTGAPGHEHRSRAGLRVRCVQLCKHNGG 1717


>UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_5, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2443

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = -1

Query: 86   FCNIYCRTR----KYARWWGCMNNSAY 18
            +CNI+ RTR      A +WGCMN S Y
Sbjct: 1648 YCNIWYRTRYSCENIANYWGCMNTSMY 1674


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 870,856,629
Number of Sequences: 1657284
Number of extensions: 19385178
Number of successful extensions: 55383
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 52402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55325
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)