Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0127
         (767 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    31   0.013
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.0  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   6.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.2  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   8.2  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   8.2  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   8.2  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
 Frame = +1

Query: 505 MTTNTELVWLKRAAACPIMNIHSEYTNSFESFVNRVIWEELLQTP-SVYIRHRLWP---K 672
           ++++ EL   K     PI +  S+   SFES  NR + EE L++   V ++  ++    +
Sbjct: 26  LSSDEELFHQKCPKPAPIYSPVSKPV-SFESLPNRRLHEEFLRSSVDVLLQEAVFEGTNR 84

Query: 673 KKEILNWRFLFGFSK*REFGTQTRPLVH 756
           K  +L WR      +  +FG ++ P  H
Sbjct: 85  KNRVLQWREPEELRRLMDFGVRSAPSTH 112


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 516 YRISLAKKGGGLPNHEHPQ 572
           Y+++  K    LP H HPQ
Sbjct: 366 YQVNPTKTRTNLPTHRHPQ 384


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 693 PIKDFLLLRPESVPNVNRWGL*KFLPYDAVHKRLERVGVLAVDVH 559
           P+ D LLL  ES  ++   G  +FLP       +E  GVL  + H
Sbjct: 224 PLSDQLLLLEESWLDLFVLGAAQFLPLMDFSVLVEACGVLQQEPH 268


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 693 PIKDFLLLRPESVPNVNRWGL*KFLPYDAVHKRLERVGVLAVDVH 559
           P+ D LLL  ES  ++   G  +FLP       +E  GVL  + H
Sbjct: 224 PLSDQLLLLEESWLDLFVLGAAQFLPLMDFSVLVEACGVLQQEPH 268


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 196 LFRTGQKPKTYPF*RNSQCEPD 261
           L R G+K  ++PF + ++  P+
Sbjct: 200 LLRNGEKHHSFPFRKTTEIPPE 221


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 448 EEDYVPHEVIRIVEPSY 498
           E+ Y+  EV+R+ +P Y
Sbjct: 337 EKKYILQEVVRVKKPHY 353


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 378 EVHVHHLLVVYNGEAVLNKTGPSFT 304
           EV+ HH  +  +   +  +TG S+T
Sbjct: 62  EVYYHHQTIPQDNPIINTETGLSYT 86


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 378 EVHVHHLLVVYNGEAVLNKTGPSFT 304
           EV+ HH  +  +   +  +TG S+T
Sbjct: 62  EVYYHHQTIPQDNPIINTETGLSYT 86


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 378 EVHVHHLLVVYNGEAVLNKTGPSFT 304
           EV+ HH  +  +   +  +TG S+T
Sbjct: 62  EVYYHHQTIPQDNPIINTETGLSYT 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,209
Number of Sequences: 336
Number of extensions: 5070
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)