Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0127
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    29   0.97 
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    28   1.3  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.2  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   5.2  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    26   6.8  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   6.8  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   9.0  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 623 SSHMTRFTNDSNELVYSLWMFMIGQ 549
           SSH  +F ND  E  Y  W F+  Q
Sbjct: 202 SSHTYKFVNDKGEFYYCKWHFITNQ 226


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 519 CIRCHAHVGWLHNSDY 472
           C RCH ++GW + S Y
Sbjct: 72  CCRCHTYIGWKYVSSY 87


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 373 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 501
           YL+ +L    PN  Y    Q A +  +DY   E IRI+E   V
Sbjct: 32  YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 259 DTMKLIVNWSGK-EFLRETW---TRFVEDSFPIVNDQEVMDVY 375
           D ++ +  W  K + ++  W   T   E SFP++ND+E + V+
Sbjct: 230 DDLETLPKWPDKVKKMQRNWIGRTTGFEISFPLLNDKETLTVF 272


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 489 AILRGHDNEYRISLAKKGGGLPNHEHPQRVHQLVRVVCEPRHMGGTSTNPIGLH 650
           A  R  D   R+++A  G    + E+  RV +LVR++C  + +  T     G H
Sbjct: 44  AYYRIFDFLQRLNIASVGVNDYHVEYSTRVEKLVRILCRVKEITKTVPPASGRH 97


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 11  PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 154
           P+ M + S  P+     VY+    + L C   NAK  + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -3

Query: 480 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 382
           +D   GH +  PP+ +   +++A + +C  ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,555,246
Number of Sequences: 5004
Number of extensions: 80740
Number of successful extensions: 254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)