Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0127
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    29   3.1  
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    29   3.1  
03_02_0102 + 5637469-5639064                                           29   5.4  
01_01_1159 + 9224331-9224473,9224586-9224727,9225412-9225483,922...    28   7.1  

>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 510 NEYRISLAKKGGGLPNHEHPQRVHQLVRVVCE 605
           N+  I LA+ G  LP+H++  +VH   +  CE
Sbjct: 885 NQVAIGLARLGSMLPDHQNRVKVHSSTQCDCE 916


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 74   KYYKNLGCLIKNAKRKKHLVEHEQE-EKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEI 244
            K+  N+   +   KRK+ LVE+ QE EK     D+ +  ED F    + +  T+++++
Sbjct: 2330 KHTSNVLSKVHEQKRKQLLVEYNQEMEKLKQKYDSLLQKEDSFYAQKEAELDTIYRKV 2387


>03_02_0102 + 5637469-5639064
          Length = 531

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 547 PPPFLARLILYSLSCPRRMAPQF*LLRGARSLLP 446
           P PF     LY L   RR A  + LLR +R L+P
Sbjct: 108 PSPFALDTALYVLGRARRFAHMWDLLRSSRRLVP 141


>01_01_1159 +
           9224331-9224473,9224586-9224727,9225412-9225483,
           9225853-9225933,9226031-9226144,9226770-9226826,
           9227209-9227310,9227617-9227767,9227851-9227927,
           9228721-9228828,9229684-9229754,9230546-9230687,
           9230903-9231001,9231112-9231240,9231445-9231559,
           9231786-9231853,9233410-9233523,9233587-9233703,
           9234079-9234132,9234221-9234326,9235272-9235402,
           9235489-9235557
          Length = 753

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +3

Query: 492 ILRGHDNEYRISLAKKGGGLPNHEHPQRVHQLVRVVCEPRHMGG 623
           IL G DN   +S+   G G+P   HPQ     V  V    H GG
Sbjct: 169 ILHG-DNS--VSVTDNGRGIPTDIHPQTKKSCVETVLTLMHAGG 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,052,273
Number of Sequences: 37544
Number of extensions: 560260
Number of successful extensions: 1443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)