Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0125
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 3e-47
SB_56| Best HMM Match : Actin (HMM E-Value=0) 185 3e-47
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 185 3e-47
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 6e-47
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 6e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 2e-28
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 2e-22
SB_54| Best HMM Match : Actin (HMM E-Value=0) 97 1e-20
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 79 4e-15
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 69 3e-12
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 59 4e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 8e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 3e-05
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 41 0.001
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.072
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 33 0.22
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.67
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 30 1.5
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 2.0
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019) 29 2.7
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_39407| Best HMM Match : TIG (HMM E-Value=0) 29 3.6
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_39039| Best HMM Match : Drf_FH1 (HMM E-Value=6.4) 29 4.7
SB_4077| Best HMM Match : PDZ (HMM E-Value=3.5e-18) 29 4.7
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07) 28 6.2
SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2) 28 6.2
SB_52309| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_32601| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_29856| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 185 bits (450), Expect = 3e-47
Identities = 93/127 (73%), Positives = 97/127 (76%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 430 QIMFETFNTPAMYVAIQAVLSLYASGLPPVSCWTPATVSSTPCPSTRDTHSPTPSLRLDF 609
QIMFETFN+PAMYVAIQAVLSLYASG + P P LRLD
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 610 GPVRDLT 630
RDLT
Sbjct: 181 AG-RDLT 186
Score = 122 bits (293), Expect = 4e-28
Identities = 55/58 (94%), Positives = 58/58 (100%)
Frame = +2
Query: 74 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 59
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 185 bits (450), Expect = 3e-47
Identities = 93/127 (73%), Positives = 97/127 (76%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 430 QIMFETFNTPAMYVAIQAVLSLYASGLPPVSCWTPATVSSTPCPSTRDTHSPTPSLRLDF 609
QIMFETFN+PAMYVAIQAVLSLYASG + P P LRLD
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 610 GPVRDLT 630
RDLT
Sbjct: 181 AG-RDLT 186
Score = 123 bits (296), Expect = 2e-28
Identities = 56/58 (96%), Positives = 58/58 (100%)
Frame = +2
Query: 74 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 59
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 185 bits (450), Expect = 3e-47
Identities = 93/127 (73%), Positives = 97/127 (76%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 430 QIMFETFNTPAMYVAIQAVLSLYASGLPPVSCWTPATVSSTPCPSTRDTHSPTPSLRLDF 609
QIMFETFN+PAMYVAIQAVLSLYASG + P P LRLD
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 181
Query: 610 GPVRDLT 630
RDLT
Sbjct: 182 AG-RDLT 187
Score = 129 bits (311), Expect = 2e-30
Identities = 58/60 (96%), Positives = 60/60 (100%)
Frame = +2
Query: 68 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 184 bits (448), Expect = 6e-47
Identities = 83/86 (96%), Positives = 86/86 (100%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 430 QIMFETFNTPAMYVAIQAVLSLYASG 507
QIMFETFN+PAMYVAIQAVLSLYASG
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASG 147
Score = 124 bits (300), Expect = 5e-29
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +2
Query: 68 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Score = 61.3 bits (142), Expect = 7e-10
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +3
Query: 510 TTGIVLDSGDGVFHTVPIYEGYALPHAIL 596
TTGIV+DSGDGV HTVPIYEGYALPHAI+
Sbjct: 149 TTGIVMDSGDGVTHTVPIYEGYALPHAII 177
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 184 bits (448), Expect = 6e-47
Identities = 83/86 (96%), Positives = 86/86 (100%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 430 QIMFETFNTPAMYVAIQAVLSLYASG 507
QIMFETFN+PAMYVAIQAVLSLYASG
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASG 147
Score = 124 bits (300), Expect = 5e-29
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +2
Query: 68 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/25 (80%), Positives = 22/25 (88%), Gaps = 2/25 (8%)
Frame = +3
Query: 510 TTGIVLDSGDGVFHTVPIYE--GYA 578
TTGIV+DSGDGV HTVPIYE GY+
Sbjct: 149 TTGIVMDSGDGVSHTVPIYEERGYS 173
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 123 bits (296), Expect = 2e-28
Identities = 55/58 (94%), Positives = 58/58 (100%)
Frame = +2
Query: 74 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 59
Score = 61.3 bits (142), Expect = 7e-10
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +3
Query: 510 TTGIVLDSGDGVFHTVPIYEGYALPHAIL 596
TTGIV+DSGDGV HTVPIYEGYALPHAI+
Sbjct: 111 TTGIVMDSGDGVTHTVPIYEGYALPHAII 139
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTF 339
++GILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = +1
Query: 412 NREKMTQIMFETFNTPAMYVAIQAVLSLYASG 507
N + M +IMFETFN+PAMYVAIQAVLSLYASG
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASG 109
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 103 bits (246), Expect = 2e-22
Identities = 53/126 (42%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Frame = +1
Query: 259 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 435
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 436 MFETFNTPAMYVAIQAVLSLYASGLPPVSCWTPATVSSTPCPSTRDTHSPTPSLRLDFGP 615
MFE + +Y+AIQAVL+LYA GL + CP P + RLD
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAG 186
Query: 616 VRDLTR 633
RD+T+
Sbjct: 187 -RDITK 191
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 86 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEA 244
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEA 61
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 97.1 bits (231), Expect = 1e-20
Identities = 52/104 (50%), Positives = 66/104 (63%)
Frame = +1
Query: 319 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 498
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 499 ASGLPPVSCWTPATVSSTPCPSTRDTHSPTPSLRLDFGPVRDLT 630
ASG + + S P P + R+D RDLT
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAG-RDLT 2231
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 92 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 193
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 78.6 bits (185), Expect = 4e-15
Identities = 32/47 (68%), Positives = 42/47 (89%)
Frame = +1
Query: 367 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 507
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+G
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATG 172
Score = 55.6 bits (128), Expect = 4e-08
Identities = 21/33 (63%), Positives = 30/33 (90%)
Frame = +3
Query: 510 TTGIVLDSGDGVFHTVPIYEGYALPHAILASGL 608
TTG+VLD+GDGV H+VPIYEG+A+PH+I+ + +
Sbjct: 174 TTGVVLDAGDGVSHSVPIYEGFAMPHSIMRTDI 206
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 69.3 bits (162), Expect = 3e-12
Identities = 28/77 (36%), Positives = 50/77 (64%)
Frame = +1
Query: 277 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 456
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 457 PAMYVAIQAVLSLYASG 507
PA ++ +VL+ +A+G
Sbjct: 63 PAFFLCKNSVLTAFANG 79
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 510 TTGIVLDSGDGVFHTVPIYEGYALPHAILASGL 608
+ G+V+DSG VP+++GY L AI+ S L
Sbjct: 81 SNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPL 113
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 193
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 58.8 bits (136), Expect = 4e-09
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = +3
Query: 510 TTGIVLDSGDGVFHTVPIYEGYALPHAIL 596
TTG+V DSGDGV H VPIYEGYALPHAIL
Sbjct: 27 TTGVVFDSGDGVSHNVPIYEGYALPHAIL 55
Score = 50.8 bits (116), Expect = 1e-06
Identities = 33/66 (50%), Positives = 36/66 (54%)
Frame = +1
Query: 433 IMFETFNTPAMYVAIQAVLSLYASGLPPVSCWTPATVSSTPCPSTRDTHSPTPSLRLDFG 612
IMFE FN+PA+YVAIQAVLSLYASG + S P P LRLD
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 613 PVRDLT 630
RDLT
Sbjct: 61 G-RDLT 65
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 8e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 62 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 208
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 271 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 384
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 504 RSTTGIVLDSGDGVFHTVPI 563
R+ TG V+DSGDGV H +P+
Sbjct: 353 RTLTGCVIDSGDGVTHVIPV 372
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 504 RSTTGIVLDSGDGVFHTVPIYEGYALPHAI 593
R+ TG V+DSGDGV H +P+ EGY + I
Sbjct: 59 RTLTGCVIDSGDGVTHVIPVAEGYVIGSCI 88
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.7 bits (76), Expect = 0.072
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -1
Query: 190 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 74
MA + D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 559 PSTRDTHSPTPSLRLDFGPVRDLTRLPSWKNPSPEPRG 672
P R+ H+ +P LD GP RD R + P P RG
Sbjct: 224 PEAREAHARSPVADLDPGPARDPNRAQNPARPKPGTRG 261
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 268 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 420
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 165 GNTARGASSPAKPALHIPEPLSTT 94
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 165 GNTARGASSPAKPALHIPEPLSTT 94
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 165 GNTARGASSPAKPALHIPEPLSTT 94
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 393 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 485
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +1
Query: 514 PVSCWTPATVSSTPCPSTRDTHSPTPSL----RLDFGPVRDLTRLPSWKNPSPEPRGTWF 681
P +TP T S TP PS T S TP+ + P T PS+ P+P T
Sbjct: 76 PTPSYTPTT-SYTPTPSYTSTTSYTPTTSYTSTTSYTPTPSYTPTPSY-TPTPSYTSTTS 133
Query: 682 HLPT 693
+ PT
Sbjct: 134 YTPT 137
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 277 PIEHGIVTNWDDMEKIWHHTFYNE 348
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 80 EVAALVVDNGSGMCKAGFAGDDAPRAV 160
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
Length = 1008
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 532 PATVSSTPCPSTRDTHSPTPSLRLDFGPVRDLTRLPSWKNPSP 660
P+T++ST P T+D HS TP+ P + PSW N SP
Sbjct: 33 PSTINSTMSPGTQD-HSRTPT------PPMSVQNAPSW-NQSP 67
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 541 VSSTPCPSTRDTHSPTPSLRLDFGPVR 621
VSSTP + + H PTP RL F PV+
Sbjct: 10 VSSTPSQMSAERHEPTPQCRLKF-PVQ 35
>SB_39407| Best HMM Match : TIG (HMM E-Value=0)
Length = 1710
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 454 TPAMYVAIQAVLSLYASGLPPVSCWTPATVSSTPCPSTRDTHSP 585
TP + Q V++LY SG P + T+ ST C T T SP
Sbjct: 1300 TPTTILGKQNVITLYGSGFPAKTSDVTVTLGSTAC--TVMTSSP 1341
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 502 SGLPPVSCWTPAT-VSSTPCPSTRDTHSPTPSLRLDFGPVRDLTRLPSWKNPSPEPRGT 675
SG+ S P+T +++T P+T+ T + PS R + T LPS K P+ + T
Sbjct: 168 SGVASPSTKQPSTALTTTKQPTTQQTTTNLPSTRQPTTNQQTTTTLPSTKQPTTTQQTT 226
>SB_39039| Best HMM Match : Drf_FH1 (HMM E-Value=6.4)
Length = 254
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +1
Query: 346 ELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGLPPVS 522
++ VA E+ LL ++ LNP ++ Q+ + + T + AS P
Sbjct: 155 QIMVAMEKRLRALLEDSTLNPDVRMQRYAQL-YNEYRTMGRLAQLPG-----ASRAAPAP 208
Query: 523 CWTPATVSSTPCPSTRDTHSPTPSLRLDFGPV 618
TP ++TP P T P P L L P+
Sbjct: 209 --TPQPTAATPLPETEPEPEPEPDLDLPDPPL 238
>SB_4077| Best HMM Match : PDZ (HMM E-Value=3.5e-18)
Length = 458
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/71 (30%), Positives = 30/71 (42%)
Frame = +3
Query: 351 ACRPRGTPRPAY*GSPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSTTGIVLD 530
ACR R PR P P+ + ++D D +I R P R + V T G+ +
Sbjct: 205 ACRGRKDPRNKPPQPPPPEPTENDEDAD---SISRKRRGIGEP-RTVIVNKDKTEGLGIS 260
Query: 531 SGDGVFHTVPI 563
G H VPI
Sbjct: 261 ITGGKEHGVPI 271
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 165 GNTARGASSPAKPALHIPEPLSTT 94
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 165 GNTARGASSPAKPALHIPEPLSTT 94
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)
Length = 825
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 626 RSRTGPKSRRKDGVGECVSLVDGHGV-EDTVAGVQHD 519
RSR GPK +G DG V +D + GV+HD
Sbjct: 221 RSRAGPKGEVTTNIGYGKEATDGDCVSDDHMIGVKHD 257
>SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2)
Length = 563
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 437 CSKHSTRPPCTSPSKPCSRCTRPVYHRYRAG 529
C H+ R P T+PS PC Y AG
Sbjct: 360 CYSHARREPSTAPSLPCDLVAATSAKMYLAG 390
>SB_52309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 653 GFFHEGSLVRSRTGPKSRRKDGVGECVS-LVDGHGVEDTVAG 531
G ++ G+LV S GP KDG +C S LV H V + G
Sbjct: 269 GVWYRGNLV-SFQGPSRLTKDGHSDCFSLLVTSHKVYEAPGG 309
>SB_32601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 435 HVRNIQHA--RHVRRHPSRALAVRVRSTTGIVLDSGDGVFHTVPIYEGYALPHAI 593
HV++ Q A R RR A + + + ++ D V+H VP Y+G ++ H +
Sbjct: 182 HVQHQQAALPRAQRRERELAKTLFIVTVLSLLCWLPDSVYHFVPYYDGKSVQHRV 236
>SB_29856| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 476 SKPCSRCTRPVYH--RYRAGLRRRCLPHRAHLRGIRTPP 586
S PC+ C + H + L R PHR LRG +T P
Sbjct: 352 SPPCASCQQYDNHAMNFDVLLNGRSYPHRTPLRGNQTTP 390
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 242 PHLLHKSPSVPYRPSRPDGGAFPRSRETLREEHHLLRSRPCTYRSHCLLPTRQLLRR 72
P L +P + RPS + S + LL RP TYR+ LP+ LL +
Sbjct: 131 PLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,834,925
Number of Sequences: 59808
Number of extensions: 670917
Number of successful extensions: 2378
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 2003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2361
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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