Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0124
(919 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 138 8e-34
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 91 2e-19
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 86 8e-18
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 84 2e-17
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 73 8e-14
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 71 2e-13
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 68 2e-12
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 62 1e-10
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 59 1e-09
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 57 4e-09
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 54 3e-08
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 50 3e-07
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 48 2e-06
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 47 3e-06
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 44 4e-05
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 40 5e-04
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 38 0.002
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 38 0.002
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 38 0.002
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 36 0.011
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 28 2.1
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 4.9
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 26 8.6
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 138 bits (335), Expect = 8e-34
Identities = 64/78 (82%), Positives = 72/78 (92%)
Frame = +2
Query: 509 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQ 688
L KILPNKVDPLVSLMMVEK+PDSTYEMVGGL+KQIKEIKEVIELPVKHPELF++LGI Q
Sbjct: 119 LIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQ 178
Query: 689 PKGVLLYGPSGPWKDIIS 742
PKG+LLYGP G K +++
Sbjct: 179 PKGILLYGPPGTGKTLLA 196
Score = 111 bits (266), Expect = 2e-25
Identities = 52/84 (61%), Positives = 65/84 (77%)
Frame = +3
Query: 252 RKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFV 431
+K+QNLRRL+AQRN LNA+VR+LR GSYVGEV+K M K KVLVKVHPEGK+V
Sbjct: 33 QKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYV 92
Query: 432 VDLDKNVDINDVTANCRVALRNES 503
VD+ ++DI ++ N RVALRN+S
Sbjct: 93 VDISPDIDIKEIKPNIRVALRNDS 116
Score = 54.8 bits (126), Expect = 2e-08
Identities = 34/69 (49%), Positives = 41/69 (59%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
LG+ K G PG GKTLLARAVAHH C FIR S QK+IG + ++M E L
Sbjct: 174 LGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSG-SELVQKYIG-EGSRMVRE-L 230
Query: 855 FVMGQRNKP 881
FVM + + P
Sbjct: 231 FVMAREHAP 239
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 91.1 bits (216), Expect = 2e-19
Identities = 43/80 (53%), Positives = 60/80 (75%)
Frame = +2
Query: 503 LYLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI 682
L + +ILP +VDPLV M +E D ++ VGGL++QI+E++EVIELP+K+PELF +GI
Sbjct: 104 LTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGI 163
Query: 683 AQPKGVLLYGPSGPWKDIIS 742
PKGVLLYGP G K +++
Sbjct: 164 KPPKGVLLYGPPGTGKTLLA 183
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 351 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVAL 491
G +GEV+K +D ++ +VK ++VV NVD + + RV+L
Sbjct: 53 GQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSL 99
Score = 33.1 bits (72), Expect = 0.057
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIR 782
+G++ K G PG GKTLLARAVA + F++
Sbjct: 161 VGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLK 196
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 85.8 bits (203), Expect = 8e-18
Identities = 34/75 (45%), Positives = 55/75 (73%)
Frame = +2
Query: 518 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKG 697
+L + DP++++M ++K P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKG
Sbjct: 168 LLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKG 227
Query: 698 VLLYGPSGPWKDIIS 742
V+LYG G K +++
Sbjct: 228 VILYGAPGTGKTLLA 242
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIR--GSXIRNWYQKFIG 821
+G++ K G PG GKTLLA+AVA+ TF+R GS + QK++G
Sbjct: 220 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSEL---IQKYLG 267
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 84.2 bits (199), Expect = 2e-17
Identities = 38/72 (52%), Positives = 51/72 (70%)
Frame = +2
Query: 521 LPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV 700
LP K+DP V++M VE+ PD TY VGG +QI+ ++EV+ELP+ PE F LGI PKG+
Sbjct: 157 LPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGI 216
Query: 701 LLYGPSGPWKDI 736
+LYGP G K +
Sbjct: 217 MLYGPPGTGKTL 228
Score = 40.7 bits (91), Expect = 3e-04
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIR--GSXIRNWYQKFIGRKAAKMGAE 848
LG+ K G PG GKTL ARAVA+ TFIR GS + QK++G + A+M E
Sbjct: 208 LGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSEL---VQKYVG-EGARMVRE 263
Query: 849 RLFVMGQRNK 878
LF M + K
Sbjct: 264 -LFEMARTKK 272
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 72.5 bits (170), Expect = 8e-14
Identities = 32/74 (43%), Positives = 50/74 (67%)
Frame = +2
Query: 518 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKG 697
ILP + D +S++ ++ PD +Y VGGLD Q +E++E +ELP+ +L+ +GI P+G
Sbjct: 111 ILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRG 170
Query: 698 VLLYGPSGPWKDII 739
VLLYGP G K ++
Sbjct: 171 VLLYGPPGTGKTML 184
Score = 33.1 bits (72), Expect = 0.057
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERLFVMGQRNKP 881
G PG GKT+L +AVA+ FIR + QK++G + +M +F M + N P
Sbjct: 175 GPPGTGKTMLVKAVANSTAANFIRVVG-SEFVQKYLG-EGPRM-VRDVFRMARENAP 228
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/85 (37%), Positives = 49/85 (57%)
Frame = +2
Query: 521 LPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV 700
LP++ D V M V++ P Y +GGL KQI+E+ E I LP++ + F LG+ PKG
Sbjct: 163 LPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGC 222
Query: 701 LLYGPSGPWKDIISSCCRSPHEVYF 775
L++GP G K +++ C + F
Sbjct: 223 LMFGPPGTGKTLLARACAAQSNATF 247
Score = 35.5 bits (78), Expect = 0.011
Identities = 25/69 (36%), Positives = 32/69 (46%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
LG++ K G PG GKTLLARA A TF++ Q FIG AK+
Sbjct: 214 LGVKPPKGCLMFGPPGTGKTLLARACAAQSNATFLK-LAAPQLVQMFIG-DGAKL-VRDA 270
Query: 855 FVMGQRNKP 881
F + + P
Sbjct: 271 FALAKEKSP 279
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 67.7 bits (158), Expect = 2e-12
Identities = 32/104 (30%), Positives = 62/104 (59%)
Frame = +2
Query: 584 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIISSCCRSPH 763
Y+ +GG +Q+ +I+E++ELP++HP+LF ++GI P+G+L+YGP G K +++ +
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282
Query: 764 EVYFHTWFXDQKLVPKIYWEKGSQNGCREALRNGPKKQAPXFXF 895
+F +++ K+ E S++ R+A +K +P F
Sbjct: 283 GAFFFL-INGPEIMSKMAGE--SESNLRKAFEEA-EKNSPAIIF 322
Score = 54.0 bits (124), Expect = 3e-08
Identities = 22/61 (36%), Positives = 40/61 (65%)
Frame = +2
Query: 560 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDII 739
V +VP+ +E +GGL++ +E++E +++PV + E F G+ KGVL +GP G K ++
Sbjct: 488 VVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
Query: 740 S 742
+
Sbjct: 548 A 548
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 678 GLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFI 779
G+ K G PG GKTLLA+A+A+ FI
Sbjct: 527 GVTPSKGVLFFGPPGTGKTLLAKAIANECSANFI 560
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 62.1 bits (144), Expect = 1e-10
Identities = 25/53 (47%), Positives = 37/53 (69%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDII 739
T+ +GGL QI +I++++ELP ++PELF I P+GVLLYGP G K ++
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMV 329
Score = 53.2 bits (122), Expect = 5e-08
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +2
Query: 572 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDI 736
P+ + +GG ++ +++KE +E P+ H E F LG+ PKGVLLYGP G K I
Sbjct: 543 PNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTI 597
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
LG+R K G PG KT+ A+A+A FI + KF+G ++ ++
Sbjct: 577 LGVRPPKGVLLYGPPGCSKTITAKAIATETGLNFIAVKG-PELFDKFVGE--SERAVRQV 633
Query: 855 FVMGQRNKPPSFXF 896
F ++ P F
Sbjct: 634 FQKARQASPSVIFF 647
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 58.8 bits (136), Expect = 1e-09
Identities = 25/61 (40%), Positives = 40/61 (65%)
Frame = +2
Query: 563 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
E D + +GGLD I E+ E++ +P+KHPE++ GI P+GVLL+GP G K +++
Sbjct: 166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLA 225
Query: 743 S 745
+
Sbjct: 226 N 226
Score = 51.2 bits (117), Expect = 2e-07
Identities = 26/82 (31%), Positives = 42/82 (51%)
Frame = +2
Query: 530 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 709
KV P VP ++ +G L E++ I P+K PEL+ ++GI+ P GVLL+
Sbjct: 473 KVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLW 532
Query: 710 GPSGPWKDIISSCCRSPHEVYF 775
GP G K +++ + + F
Sbjct: 533 GPPGCGKTLLAKAVANESKANF 554
Score = 34.3 bits (75), Expect = 0.025
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTF--IRGSXIRNWYQKFIGRKAAKMGAERLFVMGQRNKP 881
G PG GKTLLA+AVA+ + F IRG + N K++G ++ ++F+ + + P
Sbjct: 533 GPPGCGKTLLAKAVANESKANFISIRGPELLN---KYVGE--SERAVRQVFLRARASSP 586
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 56.8 bits (131), Expect = 4e-09
Identities = 22/54 (40%), Positives = 37/54 (68%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
++E VGGLD I ++KE++ LP+ +PE+F + P+GVL +GP G K +++
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMA 317
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 711 GLPGPGKTLLARAVA 755
G PG GKTL+ARA+A
Sbjct: 307 GPPGTGKTLMARALA 321
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 54.0 bits (124), Expect = 3e-08
Identities = 25/86 (29%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +2
Query: 527 NKVDPLV-SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG--IAQPKG 697
N+ + +V S +++ D +++ +GG+D+ + ++ + + P+K+PE+FD G ++ PKG
Sbjct: 68 NEYEQIVASQLVLPSEIDVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKG 127
Query: 698 VLLYGPSGPWKDIISSCCRSPHEVYF 775
+LLYGP G K +++ + F
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQSQATF 153
Score = 30.7 bits (66), Expect = 0.30
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERLFVMGQRNKP 881
G PG GKT+LA+A+A + TFI S + K+ G ++ K+ + LF + ++ +P
Sbjct: 132 GPPGCGKTMLAKALAKQSQATFINVS-VGLLTDKWFG-ESNKL-VDALFTLARKLEP 185
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 50.4 bits (115), Expect = 3e-07
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +2
Query: 584 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
+ +GGL+ I ++KE++ LP+ +PE+F L I P+GVL +GP G K +++
Sbjct: 371 FNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMA 423
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/58 (36%), Positives = 38/58 (65%)
Frame = +2
Query: 569 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
VP ++ +GGL++ +++ ++LP++ PELF + G+ GVLLYGP G K +++
Sbjct: 649 VPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELF-SQGLKPRSGVLLYGPPGTGKTLLA 705
Score = 33.5 bits (73), Expect = 0.043
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 678 GLRNQKESYCMGLPGPGKTLLARAVAHHMRCTF--IRGSXIRNWY 806
GL+ + G PG GKTLLA+AVA + F I+G + N Y
Sbjct: 684 GLKPRSGVLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMY 728
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/67 (37%), Positives = 41/67 (61%)
Frame = +2
Query: 542 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSG 721
L S ++VEK P+ ++ + GL+ + +KE + LP+K P+LF + G G+LLYGP G
Sbjct: 115 LTSAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLF-SHGRKPWSGILLYGPPG 172
Query: 722 PWKDIIS 742
K ++
Sbjct: 173 TGKSYLA 179
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERLFVMGQRNKP 881
G PG GK+ LA+AVA TF S + K++G ++ +LF M + KP
Sbjct: 169 GPPGTGKSYLAKAVATEAGSTFFSISS-SDLVSKWMGE--SERLVRQLFEMAREQKP 222
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 43.6 bits (98), Expect = 4e-05
Identities = 33/113 (29%), Positives = 56/113 (49%)
Frame = +2
Query: 557 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDI 736
M E+ + + V G+D+ +E++E+++ ++ P F LG P+GVLL GP G K +
Sbjct: 257 MEERAINVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 737 ISSCCRSPHEVYFHTWFXDQKLVPKIYWEKGSQNGCREALRNGPKKQAPXFXF 895
++ V F +F ++Y G++ RE L +KQAP F
Sbjct: 316 LARAVAGEANVPF--FFMSGSQFDEMYVGVGAKR-VRE-LFAAARKQAPSIIF 364
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 39.9 bits (89), Expect = 5e-04
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +2
Query: 593 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIISSCCRSPHEVY 772
V G+D+ +EI E ++ +K+P+ ++ LG P+G +L GP G K +++ V
Sbjct: 298 VAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVP 356
Query: 773 F 775
F
Sbjct: 357 F 357
Score = 32.7 bits (71), Expect = 0.075
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
LG + + + G PG GKTLLA+A A F+ S + + F+G +++ L
Sbjct: 324 LGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSG-SEFLEMFVGVGPSRV--RDL 380
Query: 855 FVMGQRNKP 881
F ++N P
Sbjct: 381 FATARKNAP 389
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 593 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPSGPWKDIIS 742
+ GLD +KE + P PELF G+ +P +G+LL+GP G K +++
Sbjct: 381 IAGLDDAKNSLKEAVIYPFLRPELFQ--GLREPVQGMLLFGPPGTGKTMLA 429
Score = 32.7 bits (71), Expect = 0.075
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 678 GLRNQKESYCM-GLPGPGKTLLARAVAHHMRCTF 776
GLR + + G PG GKT+LARAVA + TF
Sbjct: 407 GLREPVQGMLLFGPPGTGKTMLARAVATEAKATF 440
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +2
Query: 593 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIISSCCRSPHEVY 772
+ G+ + + ++++IE PVK+ ++ + P G+LL+G G K ++S S V
Sbjct: 608 IAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQ 667
Query: 773 F 775
F
Sbjct: 668 F 668
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTF--IRGSXIRNWYQKFIGRKAAKMGAERLFVMGQRNKP 881
G PG GKT LA A++ F I+G + K+IG+ ++ G LF Q KP
Sbjct: 647 GYPGCGKTYLASAISSTFPVQFISIKGPEL---LDKYIGK--SEQGVRDLFSRAQMAKP 700
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 593 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
+GGLD + I + + P + + LGI KG+LLYGP G K +I+
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIA 321
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRC---TFIRGSXIRNWYQKFIGRKAAKMGA 845
LG+ + K G PG GKTL+AR + + + G I N K++G+ ++
Sbjct: 299 LGINHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN---KYVGQ--SEENV 353
Query: 846 ERLFVMGQR 872
+LF +R
Sbjct: 354 RKLFADAER 362
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 35.5 bits (78), Expect = 0.011
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 584 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPSGPWKDIIS 742
++ + GL+ +KE + P P+LF G+ +P +G+LL+GP G K +++
Sbjct: 458 WDDISGLEFAKHSLKEAVVYPFLRPDLFQ--GLREPARGMLLFGPPGTGKTMLA 509
Score = 33.9 bits (74), Expect = 0.032
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 678 GLRNQKESYCM-GLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
GLR + G PG GKT+LARAVA R F S + KF+G + A L
Sbjct: 487 GLREPARGMLLFGPPGTGKTMLARAVATESRSVFFSIS-ASSLTSKFLGESEKLVRA--L 543
Query: 855 FVMGQRNKP 881
F + ++ P
Sbjct: 544 FTLAKKLSP 552
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 602 LDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWK 730
L+ +K+ I + + +++ + +D GI +G LLYGP G K
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGK 255
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 572 PDSTYEMVGGLDKQIKEIKEV 634
P +YE++ GLDKQ + K+V
Sbjct: 18 PKESYELLHGLDKQYQSTKDV 38
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 466 TSLISTFLSKSTTNLPSG*TFTRTFFLSIGLTT 368
TS+IS+ S S T++PS + +FF + G T+
Sbjct: 822 TSIISSIASSSYTSIPSISSIASSFFDASGFTS 854
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 517 NTTQQSRSSCVAHDGRESAGLYLRNGRWSRQTNQGD 624
N+T + SS A+ +S+G ++ NG+ + + G+
Sbjct: 233 NSTSKVMSSASANKPSKSSGFHINNGKSKEEKSHGE 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,377,919
Number of Sequences: 5004
Number of extensions: 66902
Number of successful extensions: 250
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -