Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0122
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 4e-43
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 4e-43
SB_56| Best HMM Match : Actin (HMM E-Value=0) 171 4e-43
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 171 4e-43
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 4e-43
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 8e-33
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_54| Best HMM Match : Actin (HMM E-Value=0) 94 7e-20
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 76 2e-14
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 67 1e-11
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 56 2e-08
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 46 2e-05
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 2e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 33 0.19
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 32 0.43
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.57
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 30 1.3
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 30 1.7
SB_24586| Best HMM Match : AraC_N (HMM E-Value=3.7) 30 1.7
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 30 1.7
SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8) 30 1.7
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 30 1.7
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 30 1.7
SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11) 30 1.7
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.7
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 2.3
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 29 3.0
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1) 29 4.0
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2) 28 5.3
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 27 9.3
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21) 27 9.3
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 27 9.3
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 27 9.3
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_42104| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 27 9.3
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 27 9.3
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 27 9.3
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 27 9.3
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 171 bits (416), Expect = 4e-43
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = +1
Query: 256 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 435
KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 69 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128
Query: 436 NTPAMYVAIQAVLSLYAS 489
N+PAMYVAIQAVLSLYAS
Sbjct: 129 NSPAMYVAIQAVLSLYAS 146
Score = 138 bits (335), Expect = 3e-33
Identities = 65/71 (91%), Positives = 67/71 (94%)
Frame = +2
Query: 53 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 232
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 233 SKRGILTPNTP 265
SKRGILT P
Sbjct: 61 SKRGILTLKYP 71
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +2
Query: 509 LDSGDGVSHTVPIYEGYRTPPRHSASGT*PGGDLTDY 619
+DSGDGV+HTVPIYEGY P G DLTDY
Sbjct: 154 MDSGDGVTHTVPIYEGYALPHAIIRLDL-AGRDLTDY 189
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 489 GRTTGIVWTPATVSPTPCPSTKDTALPHAILRLGLS 596
GRTTGIV P + ALPHAI+RL L+
Sbjct: 147 GRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLA 182
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 171 bits (416), Expect = 4e-43
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = +1
Query: 256 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 435
KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 68 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 127
Query: 436 NTPAMYVAIQAVLSLYAS 489
N+PAMYVAIQAVLSLYAS
Sbjct: 128 NSPAMYVAIQAVLSLYAS 145
Score = 136 bits (328), Expect = 2e-32
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +2
Query: 59 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 238
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 239 RGILTPNTP 265
RGILT P
Sbjct: 62 RGILTLKYP 70
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +2
Query: 509 LDSGDGVSHTVPIYEGYRTPPRHSASGT*PGGDLTDY 619
+DSGDGV+HTVPIYEGY P G DLTDY
Sbjct: 153 MDSGDGVTHTVPIYEGYALPHAILRLDL-AGRDLTDY 188
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +3
Query: 489 GRTTGIVWTPATVSPTPCPSTKDTALPHAILRLGLS 596
GRTTGIV P + ALPHAILRL L+
Sbjct: 146 GRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 171 bits (416), Expect = 4e-43
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = +1
Query: 256 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 435
KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 68 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 127
Query: 436 NTPAMYVAIQAVLSLYAS 489
N+PAMYVAIQAVLSLYAS
Sbjct: 128 NSPAMYVAIQAVLSLYAS 145
Score = 137 bits (331), Expect = 8e-33
Identities = 64/69 (92%), Positives = 66/69 (95%)
Frame = +2
Query: 59 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 238
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 239 RGILTPNTP 265
RGILT P
Sbjct: 62 RGILTLKYP 70
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +2
Query: 509 LDSGDGVSHTVPIYEGYRTPPRHSASGT*PGGDLTDY 619
+DSGDGV+HTVPIYEGY P G DLTDY
Sbjct: 153 MDSGDGVTHTVPIYEGYALPHAILRLDL-AGRDLTDY 188
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +3
Query: 489 GRTTGIVWTPATVSPTPCPSTKDTALPHAILRLGLS 596
GRTTGIV P + ALPHAILRL L+
Sbjct: 146 GRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 171 bits (416), Expect = 4e-43
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = +1
Query: 256 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 435
KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 69 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128
Query: 436 NTPAMYVAIQAVLSLYAS 489
N+PAMYVAIQAVLSLYAS
Sbjct: 129 NSPAMYVAIQAVLSLYAS 146
Score = 143 bits (346), Expect = 1e-34
Identities = 66/71 (92%), Positives = 68/71 (95%)
Frame = +2
Query: 53 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 232
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 233 SKRGILTPNTP 265
SKRGILT P
Sbjct: 61 SKRGILTLKYP 71
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +2
Query: 509 LDSGDGVSHTVPIYEGYRTPPRHSASGT*PGGDLTDY 619
+DSGDGV+HTVPIYEGY P G DLTDY
Sbjct: 154 MDSGDGVTHTVPIYEGYALPHAILRLDL-AGRDLTDY 189
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +3
Query: 489 GRTTGIVWTPATVSPTPCPSTKDTALPHAILRLGLS 596
GRTTGIV P + ALPHAILRL L+
Sbjct: 147 GRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 182
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 171 bits (416), Expect = 4e-43
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = +1
Query: 256 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 435
KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 69 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128
Query: 436 NTPAMYVAIQAVLSLYAS 489
N+PAMYVAIQAVLSLYAS
Sbjct: 129 NSPAMYVAIQAVLSLYAS 146
Score = 138 bits (335), Expect = 3e-33
Identities = 63/71 (88%), Positives = 67/71 (94%)
Frame = +2
Query: 53 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 232
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 233 SKRGILTPNTP 265
SKRGILT P
Sbjct: 61 SKRGILTLKYP 71
Score = 35.5 bits (78), Expect = 0.035
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2
Query: 509 LDSGDGVSHTVPIYE 553
+DSGDGVSHTVPIYE
Sbjct: 154 MDSGDGVSHTVPIYE 168
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 137 bits (331), Expect = 8e-33
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +2
Query: 59 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 238
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 239 RGILTPNTP 265
RGILT P
Sbjct: 62 RGILTLKYP 70
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = +1
Query: 397 NREKMTQIMFETFNTPAMYVAIQAVLSLYAS 489
N + M +IMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYAS 108
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +1
Query: 256 KYPIEHGIVTNWDDMEKIWHHTF 324
KYPIEHGIVTNWDDMEKI TF
Sbjct: 68 KYPIEHGIVTNWDDMEKIMFETF 90
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +2
Query: 509 LDSGDGVSHTVPIYEGYRTPPRHSASGT*PGGDLTDY 619
+DSGDGV+HTVPIYEGY P G DLTDY
Sbjct: 116 MDSGDGVTHTVPIYEGYALPHAIIRLDL-AGRDLTDY 151
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 489 GRTTGIVWTPATVSPTPCPSTKDTALPHAILRLGLS 596
GRTTGIV P + ALPHAI+RL L+
Sbjct: 109 GRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLA 144
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 96.7 bits (230), Expect = 1e-20
Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
Frame = +1
Query: 235 QKRYP-DPKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREK 408
Q RY + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREK
Sbjct: 63 QLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREK 122
Query: 409 MTQIMFETFNTPAMYVAIQAVLSLYA 486
M ++MFE + +Y+AIQAVL+LYA
Sbjct: 123 MIEVMFENYQFEGVYIAIQAVLTLYA 148
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +2
Query: 71 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 244
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 245 ILTPNTP 265
+L N P
Sbjct: 67 MLEVNYP 73
Score = 35.1 bits (77), Expect = 0.046
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 509 LDSGDGVSHTVPIYEGYRTP 568
+DSGDGV+H P+YEG+ P
Sbjct: 157 IDSGDGVTHICPVYEGFALP 176
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 94.3 bits (224), Expect = 7e-20
Identities = 42/62 (67%), Positives = 52/62 (83%)
Frame = +1
Query: 304 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 483
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 484 AS 489
AS
Sbjct: 2189 AS 2190
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 77 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 178
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/36 (52%), Positives = 21/36 (58%)
Frame = +2
Query: 512 DSGDGVSHTVPIYEGYRTPPRHSASGT*PGGDLTDY 619
D GDGVSHTVP+Y+GY P G DLT Y
Sbjct: 2199 DCGDGVSHTVPVYDGYWLPHATQRIDL-AGRDLTHY 2233
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 76.2 bits (179), Expect = 2e-14
Identities = 31/46 (67%), Positives = 41/46 (89%)
Frame = +1
Query: 352 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 489
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYAT 171
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +2
Query: 509 LDSGDGVSHTVPIYEGYRTPPRHSASGT-*PGGDLTDY 619
LD+GDGVSH+VPIYEG+ P HS T G D++ Y
Sbjct: 179 LDAGDGVSHSVPIYEGFAMP--HSIMRTDIAGRDVSRY 214
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/76 (35%), Positives = 49/76 (64%)
Frame = +1
Query: 262 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 441
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 442 PAMYVAIQAVLSLYAS 489
PA ++ +VL+ +A+
Sbjct: 63 PAFFLCKNSVLTAFAN 78
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 62 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 178
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Frame = +2
Query: 47 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 217
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 218 GDEAQSKRGILTPN 259
GD A +K G++ N
Sbjct: 753 GDAAVAKSGVMHLN 766
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 418 IMFETFNTPAMYVAIQAVLSLYAS 489
IMFE FN+PA+YVAIQAVLSLYAS
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYAS 24
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/36 (61%), Positives = 22/36 (61%)
Frame = +2
Query: 512 DSGDGVSHTVPIYEGYRTPPRHSASGT*PGGDLTDY 619
DSGDGVSH VPIYEGY P G DLTDY
Sbjct: 33 DSGDGVSHNVPIYEGYALPHAILRLDL-AGRDLTDY 67
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +3
Query: 489 GRTTGIVWTPATVSPTPCPSTKDTALPHAILRLGLS 596
GRTTG+V+ P + ALPHAILRL L+
Sbjct: 25 GRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 256 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 369
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 175 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 59
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 509 LDSGDGVSHTVPIYEGY 559
+DSGDGV+H +P+ EGY
Sbjct: 66 IDSGDGVTHVIPVAEGY 82
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -1
Query: 270 FDGVFGVRIPLLLCASSPT*ESFCPIPTITP*WRGLPT 157
+DGV +++ LLL +SSP S PI TP +GL T
Sbjct: 273 YDGVIDIKLNLLLLSSSPMFLSAVPIAPHTPTLQGLHT 310
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 150 GNTARGASSPAKPALHIPEPLSTT 79
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 150 GNTARGASSPAKPALHIPEPLSTT 79
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 150 GNTARGASSPAKPALHIPEPLSTT 79
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 378 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 470
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 216 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 411 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 262 PIEHGIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 405
P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 134 PFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = -3
Query: 238 FALCLISYI--RVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQR 74
FA CL + V+LSH + H L A +HG R+ SCET L H A + +
Sbjct: 462 FATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKH 520
Query: 73 GNFFVAHLELVK 38
G V L+ K
Sbjct: 521 GQVDVLLLDFQK 532
>SB_24586| Best HMM Match : AraC_N (HMM E-Value=3.7)
Length = 124
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 450 VRRHPSRALAVRVGRTTGIVWTPATVSPTPCPSTKDTALP 569
V RHP + ++ TT T A PTP P T T P
Sbjct: 5 VSRHPKQQSVIQTSTTTKPTPTTANGQPTPTPLTPATQRP 44
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 274 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)
Length = 551
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 517 RRRCLPHRAHLRRIPHSPTPFCVWDLARRRPH 612
R +C HR HL RIP P+ D RPH
Sbjct: 85 RDQC-EHRPHLARIPCKHRPYLASDSCEHRPH 115
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 252 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)
Length = 905
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 462 PSRALAVRVGRTTGIVWTPATVSPTPCPSTKDTALPHAILRLGLSPAAT 608
PS AV T +V +P+ PS +T H+I + +SP+AT
Sbjct: 56 PSATEAVVSPSATEVVMSPSATQIVVSPSATETVAQHSINKTVVSPSAT 104
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 262 PIEHGIVTNWDDMEKIWHHTFYNE 333
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 65 EVAALVVDNGSGMCKAGFAGDDAPRAV 145
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 128 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 434 STRPPCTSPSKPCSRCTRRSYHRYRLDSGDGVSHTVPIYE-GY-RTPPRHS--ASGT*PG 601
S++PP +PS P + S + DS TVP+ E G+ R H+ A+GT PG
Sbjct: 264 SSQPPTETPSPPQTNAEVSSTPETQQDSSSLPDFTVPLLEMGFSRRHVLHAMQATGTRPG 323
Query: 602 GD 607
D
Sbjct: 324 AD 325
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C ++LSH + H M D +HG RS SCET L T
Sbjct: 176 ICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = -2
Query: 356 CSSGATRSSL*KV*CQIFSMSSQLVTIPCSMG--YLGSGYLFCSVPHLLHKSPSVPYRPS 183
CS + + C + ++V CS Y+ + CS + H+ PS
Sbjct: 88 CSPSRAHVDVFPITCSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSPS 147
Query: 182 RPDGGAFPRSRGTRREEHHLLRNRPCTYRSH 90
R D FP + R HH+L + + R+H
Sbjct: 148 RADVDVFPITCSRRCVFHHVLMSMCSSSRAH 178
>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
Length = 798
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/81 (27%), Positives = 35/81 (43%)
Frame = +1
Query: 334 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASVVPPVSSG 513
L+ APE P+ EAP PK + ++ Q + TP +Q +L + V
Sbjct: 330 LKKAPEHKPLDEVEAPQFPKLHHVELPQTEKKVDETPRF---VQPLLK--KTTVNVKGPD 384
Query: 514 LRRRCLPHRAHLRRIPHSPTP 576
+ + P HL ++ H TP
Sbjct: 385 QKDKAEPEPLHLPKLHHVETP 405
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 150 GNTARGASSPAKPALHIPEPLSTT 79
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 150 GNTARGASSPAKPALHIPEPLSTT 79
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2)
Length = 563
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 422 CSKHSTRPPCTSPSKPCSRCTRRSYHRYRLDSG 520
C H+ R P T+PS PC S Y G
Sbjct: 360 CYSHARREPSTAPSLPCDLVAATSAKMYLAGQG 392
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 158 VGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTPNTPSNTESS 283
VG R G D+ +G A +RG L PN P++ SS
Sbjct: 3986 VGVGRSSPTKEGSSLLDNMLGFSAGKRRGSLLPNEPTDLSSS 4027
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 378 SPQPQGQQREDDPDHV-RNIQHARHVRRHPSRALAVRVGRTTGIVWTPATVSPTPCPSTK 554
S +P Q D + + +++ H+ P ++ A + TTG++ TPA +PTP +
Sbjct: 881 SNKPSNQGASDGKGNASKTTENSPHLS--PGKSNAGQKRATTGLIQTPALGTPTPMRTPM 938
Query: 555 DTALPH 572
L H
Sbjct: 939 THPLLH 944
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +3
Query: 447 HVRR-HPSRALAVRVGRTTGIVWTPATVSPTPCPSTKDTALP 569
H R+ HP + ++ TT T A PTP P T T P
Sbjct: 437 HFRKWHPKQQSVIQTSTTTKPTPTTANGQPTPTPLTPATQRP 478
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 245 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 165 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 55
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 272 CSMGYLGSGYLFCSVPHLLHKSPSVPYRPSRP 177
C+ GY G G FC+ + PSV +RP
Sbjct: 629 CNYGYRGDGVTFCNSVTATVRPPSVLVTTARP 660
>SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21)
Length = 928
Score = 27.5 bits (58), Expect = 9.3
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -1
Query: 261 VFGVRIPLLLCASS-PT*ESFC----PIPTITP*WRGLPTIEGNTARGASSPAKPALHIP 97
VF VR+P+L+C SS T C IT + L I ++A+ S P++P P
Sbjct: 375 VFPVRLPMLVCVSSVVTHVGVCFQHQCYKCITDCLQRLLAIRQSSAQSPSLPSRPG---P 431
Query: 96 EPLSTTNAAT 67
P NA T
Sbjct: 432 PPTPDPNALT 441
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 106 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 1644 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 672 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 27.5 bits (58), Expect = 9.3
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = +2
Query: 152 SIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTPNTPSNTESSLTGMTWRRFGIIPSTM 331
SIV RPR + G G G + RG P T + T +T T R G +
Sbjct: 504 SIVRRPRRRRGGGGGGGGGGGGGGGGRGGRGRGRPTTTTTTRRCVTQKTQRADGTHVTRS 563
Query: 332 SCVSPPR 352
+CV+ R
Sbjct: 564 NCVATRR 570
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
LC + ++LSH + H L +HG R +SCET L T
Sbjct: 857 LCCKTMEHIVLSHLNKH-LSRFNILSNAQHGFRQGLSCETQLVLT 900
>SB_42104| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 27.5 bits (58), Expect = 9.3
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Frame = +3
Query: 351 GTPSPAH*GSPQPQGQQREDDPDHVRNIQHARHVRRH-------PSRALAVRVGRTTGI- 506
GTPSPA+ + P R D +V +++ H + PS A VR T +
Sbjct: 38 GTPSPANASTFDPTTHPRSKDNGNVVDLRSITHTLGNKSLQLLSPSDAQLVRRPWTREVW 97
Query: 507 -VWTPATVSPT 536
+W P ++PT
Sbjct: 98 RLWNPGYITPT 108
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 221 LLHKSPSVPYRPS--RPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPT 75
LL +S P +P+ RP GGA P++ ++ + N+ T+ PT
Sbjct: 92 LLDESTEAPPQPATIRPQGGALPQTPVKGKQNKRVSDNKEFTHAMQARRPT 142
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 227 PHLLHKSPSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLLRR 57
P L +P + RPS + S + LL RP TYR+ LP+ LL +
Sbjct: 131 PLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 227 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 1082 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 25 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 232 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 98
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 106 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,942,089
Number of Sequences: 59808
Number of extensions: 610556
Number of successful extensions: 2236
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 1941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2226
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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